Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e06
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   186   8e-48
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z92972-3|CAB07488.1|  317|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    27   7.5  
U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine rece...    27   7.5  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    27   7.5  
Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  186 bits (453), Expect = 8e-48
 Identities = 83/115 (72%), Positives = 96/115 (83%)
 Frame = +1

Query: 82  RKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRR 261
           +K  R+ + VGLGFK PR+A+EGTYIDKKCP+ GNV IRG ILTGVV K KM RTIV+RR
Sbjct: 28  KKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIRGMILTGVVLKNKMTRTIVVRR 87

Query: 262 DYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 426
           DYLHY+ KY R+EKRH+N+  H SP FRD+  GD+VTIGECRPLSKTVRFNVLKV
Sbjct: 88  DYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVLKV 142


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 222 SENEDAENYRDPPRLPSLPTQIQ*VRETAQEYVRAFVALL 341
           S+NED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 420 QNIESNCFGQRSAFADRYNITNLHVPEARRQMHGH 316
           +++E  CF Q   F D +N+T L + +  R M+ H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z92972-3|CAB07488.1|  317|Caenorhabditis elegans Hypothetical
           protein T19C9.3 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 108 ILMVTHVLPLHATFPVQEKRWPVSETLSLSD 16
           I  +T  LP+ A  P+QE   P  E L L +
Sbjct: 137 IFPLTFTLPIWAVMPIQENARPCDEALQLEN 167


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 328
           +C + +  AA T TT    I  +NG  +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 328
           +C + +  AA T TT    I  +NG  +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595


>U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein244 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 128 VLKPKPTFLW*RMSFLFMPPFLF---RKNGGLFLKRFLCLIRHFA 3
           V KP   F++  + F+F+PPFL    ++N   F+   L  + HF+
Sbjct: 135 VRKPYLIFVYISVPFIFLPPFLIIPEQENARSFILDKLPCLPHFS 179


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
           cell adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 328
           +C + +  AA T TT    I  +NG  +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595


>Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical
           protein ZK662.5 protein.
          Length = 598

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 318 VRAFVALLQGRGDW*YCNDRRMQ 386
           +RAFV L++   DW Y   RRMQ
Sbjct: 250 LRAFVRLIRNNSDW-YARYRRMQ 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,856,127
Number of Sequences: 27780
Number of extensions: 217661
Number of successful extensions: 584
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)