Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e06
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.44 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 85  SSSCHLSCSGKTVACF 38
           SSS   +CSG TV CF
Sbjct: 285 SSSASTTCSGHTVRCF 300


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 73  HLSCSGKTVACF 38
           H S +GKT ACF
Sbjct: 162 HNSVTGKTTACF 173


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 26  ESVSETGHRFS*TGKVA*RGR 88
           + + E  HR   TG+V  RGR
Sbjct: 530 KGIDEYVHRIGRTGRVGNRGR 550


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,209
Number of Sequences: 438
Number of extensions: 2473
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)