Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e01
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0404 - 2945611-2948802                                           28   1.5  
01_06_1096 + 34502668-34503036,34504294-34505317,34505388-34505656     26   6.1  

>02_01_0404 - 2945611-2948802
          Length = 1063

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 51  NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRND 218
           +S+CK  S    I F + NL   ++ L SL    S+C  Q R  ++ F    L ND
Sbjct: 8   HSSCKKCSNRCFIDFLRFNLAFALLLLLSLASPTSSCTEQERSSLLQFLS-GLSND 62


>01_06_1096 + 34502668-34503036,34504294-34505317,34505388-34505656
          Length = 553

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = +3

Query: 54  STCKTQSRDDVICFSKL----NLRNDVICLNSLYE*NSTC 161
           S C   S +D  C S      NL ND++  N LY  + TC
Sbjct: 154 SVCNQSSNEDQQCSSDFDCGENLSNDLLNANGLYLPDFTC 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,747,894
Number of Sequences: 37544
Number of extensions: 81123
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)