Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17e01
(328 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U20362-1|AAA86720.1| 824|Homo sapiens Tg737 protein. 30 1.4
BC030776-1|AAH30776.2| 833|Homo sapiens intraflagellar transpor... 30 1.4
AL590096-4|CAM20430.1| 824|Homo sapiens intraflagellar transpor... 30 1.4
AL590096-3|CAI14390.2| 833|Homo sapiens intraflagellar transpor... 30 1.4
AL161772-3|CAM13405.1| 824|Homo sapiens intraflagellar transpor... 30 1.4
AL161772-2|CAH70874.2| 833|Homo sapiens intraflagellar transpor... 30 1.4
U11701-1|AAB08752.1| 423|Homo sapiens LIM-homeobox domain prote... 28 5.8
BX640833-1|CAE45907.1| 371|Homo sapiens hypothetical protein pr... 28 5.8
BC112185-1|AAI12186.1| 406|Homo sapiens LIM homeobox protein 2 ... 28 5.8
BC093662-1|AAH93662.1| 406|Homo sapiens LIM homeobox 2 protein. 28 5.8
AK094511-1|BAC04371.1| 397|Homo sapiens protein ( Homo sapiens ... 28 5.8
AF124735-1|AAD20013.1| 389|Homo sapiens LIM-homeodomain protein... 28 5.8
>U20362-1|AAA86720.1| 824|Homo sapiens Tg737 protein.
Length = 824
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LRNDVICFSKLNSLYE 254
F K LRND C +LY T + +R D+ + CF KL+ LRN ++ ++YE
Sbjct: 506 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYE 563
>BC030776-1|AAH30776.2| 833|Homo sapiens intraflagellar transport
88 homolog (Chlamydomonas) protein.
Length = 833
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LRNDVICFSKLNSLYE 254
F K LRND C +LY T + +R D+ + CF KL+ LRN ++ ++YE
Sbjct: 515 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYE 572
>AL590096-4|CAM20430.1| 824|Homo sapiens intraflagellar transport
88 homolog (Chlamydomonas) protein.
Length = 824
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LRNDVICFSKLNSLYE 254
F K LRND C +LY T + +R D+ + CF KL+ LRN ++ ++YE
Sbjct: 506 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYE 563
>AL590096-3|CAI14390.2| 833|Homo sapiens intraflagellar transport
88 homolog (Chlamydomonas) protein.
Length = 833
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LRNDVICFSKLNSLYE 254
F K LRND C +LY T + +R D+ + CF KL+ LRN ++ ++YE
Sbjct: 515 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYE 572
>AL161772-3|CAM13405.1| 824|Homo sapiens intraflagellar transport
88 homolog (Chlamydomonas) protein.
Length = 824
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LRNDVICFSKLNSLYE 254
F K LRND C +LY T + +R D+ + CF KL+ LRN ++ ++YE
Sbjct: 506 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYE 563
>AL161772-2|CAH70874.2| 833|Homo sapiens intraflagellar transport
88 homolog (Chlamydomonas) protein.
Length = 833
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LRNDVICFSKLNSLYE 254
F K LRND C +LY T + +R D+ + CF KL+ LRN ++ ++YE
Sbjct: 515 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYE 572
>U11701-1|AAB08752.1| 423|Homo sapiens LIM-homeobox domain protein
protein.
Length = 423
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 189 CFSKLNLRNDVICFSKLNSLY 251
C KLNL +++ CFSK S+Y
Sbjct: 80 CECKLNLESELTCFSKDGSIY 100
>BX640833-1|CAE45907.1| 371|Homo sapiens hypothetical protein
protein.
Length = 371
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LRNDVICFSKLNSLY 251
F K LRND C +LY T + +R D+ + CF KL+ LRN ++ ++Y
Sbjct: 313 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANMY 369
>BC112185-1|AAI12186.1| 406|Homo sapiens LIM homeobox protein 2
protein.
Length = 406
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 189 CFSKLNLRNDVICFSKLNSLY 251
C KLNL +++ CFSK S+Y
Sbjct: 81 CECKLNLESELTCFSKDGSIY 101
>BC093662-1|AAH93662.1| 406|Homo sapiens LIM homeobox 2 protein.
Length = 406
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 189 CFSKLNLRNDVICFSKLNSLY 251
C KLNL +++ CFSK S+Y
Sbjct: 81 CECKLNLESELTCFSKDGSIY 101
>AK094511-1|BAC04371.1| 397|Homo sapiens protein ( Homo sapiens
cDNA FLJ37192 fis, clone BRALZ2003525, highly similar to
LIM/HOMEOBOX PROTEIN LHX2. ).
Length = 397
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 189 CFSKLNLRNDVICFSKLNSLY 251
C KLNL +++ CFSK S+Y
Sbjct: 64 CECKLNLESELTCFSKDGSIY 84
>AF124735-1|AAD20013.1| 389|Homo sapiens LIM-homeodomain protein
HLHX2 protein.
Length = 389
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 189 CFSKLNLRNDVICFSKLNSLY 251
C KLNL +++ CFSK S+Y
Sbjct: 64 CECKLNLESELTCFSKDGSIY 84
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,593,334
Number of Sequences: 237096
Number of extensions: 482176
Number of successful extensions: 4831
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4831
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1685725862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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