Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e01
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78420-3|CAC42299.1|   85|Caenorhabditis elegans Hypothetical pr...    26   5.6  
AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical ...    26   5.6  
Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z81556-10|CAB04528.1|  126|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z81076-13|CAB03062.1|  126|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    25   9.7  

>Z78420-3|CAC42299.1|   85|Caenorhabditis elegans Hypothetical
           protein F45H11.5 protein.
          Length = 85

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 99  KLNLRNDVICLNSLYE*NSTCKTQSRDDVIC 191
           KL + N ++CL+   + NS C++ ++D   C
Sbjct: 30  KLEMLNYMVCLHEKKQQNSECRSTAKDYFEC 60


>AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical
           protein C23H5.7 protein.
          Length = 644

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 9   DVICFSKLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICL 131
           D+   S+L  L+E      T+       F KL + ND+ CL
Sbjct: 96  DIFVQSRLTYLHEGEEVKNTKKLRKNYFFQKLKVANDIFCL 136


>Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical
           protein C34B7.1 protein.
          Length = 440

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/62 (22%), Positives = 26/62 (41%)
 Frame = +3

Query: 51  NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICF 230
           N+ CKTQ++  +   +   L   V C        + C+T + +   C  +  L N+ +  
Sbjct: 103 NNDCKTQTQPTLPPVNPTPLLGSVTCYECSTNDGTDCQTNTCEGAYCLYERRLFNNQMYL 162

Query: 231 SK 236
            K
Sbjct: 163 RK 164


>Z81556-10|CAB04528.1|  126|Caenorhabditis elegans Hypothetical
           protein F35C5.12 protein.
          Length = 126

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = +3

Query: 90  CFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKL----NLRNDVICFSKLNSL 248
           C+  +   +  IC       +  CK Q  +   CF +L    +LR    CF KL  L
Sbjct: 55  CYEYITPLDGSICETRQMACSEKCKDQGSEGGFCFPQLDSHKSLRTACECFKKLQVL 111


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 24   SKLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVI 125
            +K   LYE +STC  +  D V  + +L + +D I
Sbjct: 1385 TKSKELYERSSTCIERLEDCVEMYQRLKMESDEI 1418


>Z81076-13|CAB03062.1|  126|Caenorhabditis elegans Hypothetical
           protein F35C5.12 protein.
          Length = 126

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = +3

Query: 90  CFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKL----NLRNDVICFSKLNSL 248
           C+  +   +  IC       +  CK Q  +   CF +L    +LR    CF KL  L
Sbjct: 55  CYEYITPLDGSICETRQMACSEKCKDQGSEGGFCFPQLDSHKSLRTACECFKKLQVL 111


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 24   SKLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVI 125
            +K   LYE +STC  +  D V  + +L + +D I
Sbjct: 1385 TKSKELYERSSTCIERLEDCVEMYQRLKMESDEI 1418


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 24   SKLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVI 125
            +K   LYE +STC  +  D V  + +L + +D I
Sbjct: 1385 TKSKELYERSSTCIERLEDCVEMYQRLKMESDEI 1418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,781,761
Number of Sequences: 27780
Number of extensions: 96873
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)