Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17d20
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 185 3e-48
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 155 6e-39
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 144 8e-36
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 143 1e-35
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 95 6e-21
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 89 4e-19
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 84 1e-17
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 62 4e-11
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 43 3e-05
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 4.4
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 185 bits (451), Expect = 3e-48
Identities = 84/133 (63%), Positives = 102/133 (76%), Gaps = 1/133 (0%)
Frame = +3
Query: 168 PVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRR-DGVPLGYKGATFHRVI 344
PVVF DI + +GR+ LF+ +VPKT+ENFR+FCTGE + P+GYK +TFHR+I
Sbjct: 5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRII 64
Query: 345 KDFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITC 524
+ FMIQGGDFV+GDGTG +I+ TF DENF LKHD PGLLSMAN+GKD+NGCQFFIT
Sbjct: 65 QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITT 124
Query: 525 AKCNFLDNKXVVF 563
C+FLD K VVF
Sbjct: 125 VPCDFLDGKHVVF 137
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 155 bits (375), Expect = 6e-39
Identities = 76/129 (58%), Positives = 89/129 (68%)
Frame = +3
Query: 177 FFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFM 356
FFD+ +GR++F+LF DVVPKT+ NFR CTGE GY G+TFHRVI FM
Sbjct: 5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKG-----YGYAGSTFHRVIPQFM 59
Query: 357 IQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCN 536
+QGGDF G+GTG SIYG F DENF LKH+ PGLLSMAN+G +TNG QFFIT
Sbjct: 60 LQGGDFTRGNGTGGKSIYG-EKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTP 118
Query: 537 FLDNKXVVF 563
+LD K VVF
Sbjct: 119 WLDGKHVVF 127
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 144 bits (349), Expect = 8e-36
Identities = 74/130 (56%), Positives = 85/130 (65%)
Frame = +3
Query: 174 VFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDF 353
V+FD+ G +GR+ LF VPKT+ENFR TGE GY+G+ FHRVI +F
Sbjct: 29 VYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKG-----FGYEGSIFHRVIPNF 83
Query: 354 MIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCAKC 533
MIQGGD GDGTG SIYG S F DENF L H PGLLSMAN+G D+NG QFFIT K
Sbjct: 84 MIQGGDITKGDGTGGKSIYG-SRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKT 142
Query: 534 NFLDNKXVVF 563
+LD VVF
Sbjct: 143 PWLDGHHVVF 152
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 143 bits (347), Expect = 1e-35
Identities = 73/129 (56%), Positives = 87/129 (67%)
Frame = +3
Query: 177 FFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFM 356
+F I++ + FELF +VVPKT +NF C G + +DG L YKG+ FHRVIK+FM
Sbjct: 6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNG-FEKDGRCLTYKGSRFHRVIKNFM 64
Query: 357 IQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCN 536
+QGGDF G+GTG SIYG F DENF LKHD P LLSMAN+G +TNG QFFIT
Sbjct: 65 LQGGDFTRGNGTGGESIYG-EKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTP 123
Query: 537 FLDNKXVVF 563
LD K VVF
Sbjct: 124 HLDGKHVVF 132
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 95.1 bits (226), Expect = 6e-21
Identities = 55/122 (45%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Frame = +3
Query: 201 TEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVN 380
T +G+++ EL+ + PKT +NF Y Y G FHRVI DF+IQGGD
Sbjct: 8 TSLGKILIELYTEHAPKTCQNFYTLAKEGY--------YDGVIFHRVIPDFVIQGGD-PT 58
Query: 381 GDGTGVMSIYGGSTFADE-NFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCNFLDNKXV 557
G G G SIYG F DE + L H G+LSMAN+G +TN QFFIT A +LD K
Sbjct: 59 GTGRGGTSIYGDK-FDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHT 117
Query: 558 VF 563
+F
Sbjct: 118 IF 119
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 89.0 bits (211), Expect = 4e-19
Identities = 56/138 (40%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Frame = +3
Query: 153 RNPNNPVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATF 332
R N ++ + T G + +L+ + PK +NF Y Y F
Sbjct: 445 RQENGNILLGKAAIIHTTQGDISIKLYPEEAPKAVQNFTTHAENGY--------YDNTIF 496
Query: 333 HRVIKDFMIQGGDFVNGDGTGVMSIYGGSTFADE-NFGLKHDSPGLLSMANSGKDTNGCQ 509
HR+IK+FMIQGGD + GDGTG SI+ F DE + LKHD P +SMANSG +TNG Q
Sbjct: 497 HRIIKNFMIQGGDPL-GDGTGGESIWK-KDFEDEISPNLKHDRPFTVSMANSGPNTNGSQ 554
Query: 510 FFITCAKCNFLDNKXVVF 563
FFIT +LD K +F
Sbjct: 555 FFITTDLTPWLDGKHTIF 572
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 84.2 bits (199), Expect = 1e-17
Identities = 53/122 (43%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = +3
Query: 201 TEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVN 380
T G + EL D P NF + Y Y+ FHR I FMIQGGD +
Sbjct: 282 TNHGEINIELHTDYAPHAVYNFVQLAKQGY--------YRNTIFHRNIARFMIQGGD-PS 332
Query: 381 GDGTGVMSIYGGSTFADENFG-LKHDSPGLLSMANSGKDTNGCQFFITCAKCNFLDNKXV 557
G G G SI+G F DE LKHD G++SMAN GK+TNG QFFI LDNK
Sbjct: 333 GTGRGGQSIWG-KPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHT 391
Query: 558 VF 563
+F
Sbjct: 392 IF 393
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 62.5 bits (145), Expect = 4e-11
Identities = 44/132 (33%), Positives = 61/132 (46%)
Frame = +3
Query: 168 PVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIK 347
P+ + + TT G + EL+ VPK NF + C Y Y G HRV+
Sbjct: 9 PLATGTVILKTTR-GDIQIELWCKEVPKACRNFIQLCLEGY--------YDGTIVHRVVP 59
Query: 348 DFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCA 527
+F+IQGGD G G G SIYG + + L+ GL+ MA + + N QFFIT
Sbjct: 60 EFLIQGGD-PTGTGMGGESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLG 118
Query: 528 KCNFLDNKXVVF 563
+ K +F
Sbjct: 119 PTPEWNGKQTLF 130
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 43.2 bits (97), Expect = 3e-05
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Frame = +3
Query: 201 TEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVN 380
T +G ++ +LF PKT ENF + C +Y Y F+ + ++ Q GD +
Sbjct: 7 TTVGDLVIDLFVKEAPKTCENFLKLCKLKY--------YNFCPFYNIQHNYTCQTGDPLG 58
Query: 381 GDGTGVMSIYG----GSTF--ADENFGLKHDSPGLLSMAN---SGKDTN----GCQFFIT 521
G G ++ G+ F A+ N L H+ GL+SM+ S +D G QF IT
Sbjct: 59 PTGDGGRCVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIIT 118
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = -1
Query: 274 NSLKFSLV-FGTTSANNSNIIRPISVVPTVMS-KNTT 170
NS K S++ G +N+SNII+P + T++S +N T
Sbjct: 479 NSYKNSVLSIGNNHSNHSNIIKPNTYKNTILSNENNT 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,614
Number of Sequences: 5004
Number of extensions: 47314
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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