Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17d20
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.7  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   3.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 246 PKTSENFREFCTGEYRRDGVPLGYKGATFHR 338
           PK+  NF    + E  R+G  + +K  TFH+
Sbjct: 633 PKSENNF---ASQELSREGRRIFHKSDTFHK 660


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 246 PKTSENFREFCTGEYRRDGVPLGYKGATFHR 338
           PK+  NF    + E  R+G  + +K  TFH+
Sbjct: 601 PKSENNF---ASQELSREGRRIFHKSDTFHK 628


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +3

Query: 426 ADENFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCNFLDN 548
           +DE +      P + S+ N+ +         T   C F+DN
Sbjct: 81  SDEEYAANSQPPRITSVPNTSRLDKSEISLATKQACGFIDN 121


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 520 VIKN*QPLVSLPLFAMDNNPGE 455
           ++ N QP+ S  LFA D N  +
Sbjct: 147 LVNNTQPMCSPKLFAFDLNTSQ 168


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 138 IQSQLRNPNNPVVFFDIT 191
           I  Q  NP NP+  +D T
Sbjct: 178 ILDQYTNPGNPLAHYDQT 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,990
Number of Sequences: 438
Number of extensions: 3311
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)