Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17d17
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   2.3  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    27   2.3  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    27   3.0  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   3.9  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    26   3.9  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   9.1  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    25   9.1  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 402  WNRCLEHNYTREI--VRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATVSVEGANACTP 575
            WN  +   Y+  I  +R +    +P N   L           FL P+ T +V G N  T 
Sbjct: 1016 WNAPIAITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVVGGNVLTS 1075

Query: 576  EYPGTASCKSAGVCSSA 626
            +       K+  +C+++
Sbjct: 1076 QRITDVILKAFSICAAS 1092


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATVSVEGANACTPEYPGTA 593
           L H+ T +       + +PS   T +++ +  H+ L  P A+T++     A     P  A
Sbjct: 401 LNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLA 460

Query: 594 S 596
           +
Sbjct: 461 N 461


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 565 ALAPSTETVAAGGKNN 518
           A +PST+++AAGG NN
Sbjct: 70  AFSPSTKSIAAGGLNN 85


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 320 CINHRRDRAVCRKSKTPTPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 484
           C  +    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 196 NIRIGIKPRAFEI*RDVDLEI*RDHSHQRCHDRSNSQF 309
           ++R+GIK R F    DV L++ +    ++ H+   +QF
Sbjct: 312 SVRLGIKERIFRQNLDVLLQLDKSERIEKIHNAYENQF 349


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 462 PVPSNRNTLSHSCTERHA 515
           P+PSN  TL  S  +RHA
Sbjct: 385 PIPSNVETLRSSLPQRHA 402


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 459 LPVPSNRNTLSHSCTERHAQLFLP---PAATVSVEGANACTPEYPGTASC 599
           LP+ S++N L +     H+QLF P   P +       N+  P YP    C
Sbjct: 15  LPLVSHKNMLENEEEASHSQLFTPCPVPPSFPKASKPNSNQP-YPNGPVC 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,762
Number of Sequences: 5004
Number of extensions: 47784
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)