Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17d17
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352...    30   1.8  
03_05_1070 + 30125131-30127029                                         29   3.1  
03_02_0925 - 12440917-12441560,12441675-12441810                       29   4.1  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    28   5.4  
11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    28   7.1  
05_07_0225 + 28510996-28511080,28511184-28511437,28512964-285130...    27   9.4  
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744...    27   9.4  

>03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,
            3523189-3523270,3523420-3523692,3523953-3524162,
            3524252-3524337,3525197-3525289,3526003-3526227,
            3526320-3526930,3529328-3529395,3529491-3529679,
            3529773-3529901,3530013-3532484
          Length = 1579

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -2

Query: 604  DLHDAVPGYSGVHALAPS-TETVAAGGKNNCAWRSVQECDSVLRLDGTGKVVINLTISRV 428
            ++H+ + GY G   +A S  + +    K N  W++V+   + L+ +G GK   N  +  +
Sbjct: 1079 EVHNGL-GYPGTRPIASSDVDLIKPTVKVNGVWKNVEYTKATLKANGVGKNAENTKVPTI 1137

Query: 427  *LCSKQR 407
                K R
Sbjct: 1138 PSTQKSR 1144


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 565 ALAPSTETVAAGGKNNCAWRSVQECDS-VLRLD 470
           A+A      A GG+   AWRS    DS VLRLD
Sbjct: 512 AMAARHSADAGGGRGEAAWRSTATQDSQVLRLD 544


>03_02_0925 - 12440917-12441560,12441675-12441810
          Length = 259

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 498 CTERHAQLFLPPAATVSVEGANACTPEY 581
           C   H +  LP  ATV+V   N C P Y
Sbjct: 85  CAGDHRRSCLPGGATVTVTATNFCPPNY 112


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLS 491
           L+H  TR+++ L    PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 610 PADLHDAVPGYSGVHALAPSTETVAAGGKNNCAWRSVQE 494
           PADL D + G  G H    ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>05_07_0225 +
           28510996-28511080,28511184-28511437,28512964-28513085,
           28513399-28513474,28513507-28513616,28513647-28513920
          Length = 306

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 522 FLPPAATVSVEGANACTPEYPGTASCKSAGVCSSA 626
           FL P  +VSVE  N   P+Y   +S +     SSA
Sbjct: 162 FLLPHMSVSVEDVNPMIPQYKSVSSVEQVQSSSSA 196


>05_04_0209 -
           19073147-19074041,19074117-19074163,19074258-19074437,
           19074839-19074955,19075105-19075227,19075391-19075776,
           19076177-19076303,19077140-19077202,19078035-19078086,
           19078189-19080023
          Length = 1274

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +3

Query: 435 EIVRLMTTLPVPSN-RNTLSHSCTERHAQLFLPPAATVSVEGANACTPEYPGTAS 596
           E++R  T  P P   R T+    T   A L  PP   +SV   N    +Y G  S
Sbjct: 119 ELLRTTTAEPTPEGVRWTVRKDVTRYSALLRSPPGGVLSVMLENVVNDKYTGVYS 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,227,451
Number of Sequences: 37544
Number of extensions: 309503
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)