Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17d17
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   3.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.9  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 139 LGQFCVIYFFLLTTSLLV 192
           +G+  +I FF+LTT L++
Sbjct: 1   MGRITIIRFFVLTTMLMM 18


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 49  CFNKNRTHERH 17
           C+N++RT ERH
Sbjct: 329 CWNEHRTLERH 339


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 49  CFNKNRTHERH 17
           C+N++RT ERH
Sbjct: 329 CWNEHRTLERH 339


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 49  CFNKNRTHERH 17
           C+N++RT ERH
Sbjct: 329 CWNEHRTLERH 339


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +1

Query: 151 CVIYFFLLTTSLLVDNIRIGIKPRAFEI*RDVD 249
           C+++F +    + V  IRIG++ ++  +  +V+
Sbjct: 210 CILFFLIPMVFIAVLYIRIGLRIQSDSLAENVE 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,221
Number of Sequences: 438
Number of extensions: 3561
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)