Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17d13
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   158   3e-40
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   153   8e-39
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.38 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    28   0.67 
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.6  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   3.6  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    24   8.2  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  158 bits (384), Expect = 3e-40
 Identities = 70/98 (71%), Positives = 84/98 (85%)
 Frame = +2

Query: 32  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 211
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 212 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 325
            + +PKLY KL YCVSCAIHS+VVR RS++ RRIRTPP
Sbjct: 61  EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPP 98


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  153 bits (372), Expect = 8e-39
 Identities = 72/117 (61%), Positives = 91/117 (77%), Gaps = 3/117 (2%)
 Frame = +2

Query: 32  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 211
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 212 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPESNFPRDMSR--PQAVQR 373
            + +PK+Y KL YCVSCAIH++VVR RS++ RRIRT PP   + RD  R  P A+ +
Sbjct: 61  EYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 113 RCVPKDKAIKKFVIRNIVEAAAVRDI 190
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 0.67
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 172 RFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASS 53
           + +DV + +L + + L   P+A+C  +S ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 97  SHSFNVTTSMLGASSITAL---TSHVSNLRSGEQ 5
           +  FN+ TS   +SS+T+    +SH+SN  + ++
Sbjct: 97  ARDFNILTSNFASSSVTSAPTQSSHISNFTNSQK 130


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 279 LSGTDRRKTEESVLLPRVTSLGT 347
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 119 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSK 298
           +PKDKA++    RN  +  A   I DA         KL A+L   V     SK  +  SK
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDA---------KLLARLER-VRAWKESKAKQEASK 216

Query: 299 K-DRRIRTPPE 328
           K + ++ T P+
Sbjct: 217 KEEHKLNTKPQ 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,856
Number of Sequences: 5004
Number of extensions: 24287
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)