Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17d11
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical pr... 36 0.038
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 33 0.27
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 33 0.27
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 33 0.27
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 33 0.27
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 32 0.47
U40797-14|AAB37544.2| 200|Caenorhabditis elegans Hypothetical p... 30 1.9
AC024849-1|AAK68546.2| 374|Caenorhabditis elegans Hypothetical ... 30 1.9
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 28 5.7
Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical pr... 28 7.6
>Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical
protein M162.7 protein.
Length = 690
Score = 35.5 bits (78), Expect = 0.038
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +1
Query: 223 TSLPSLIKQIKQKLKVPVTRAKKMPLRNQQFKQMGKFQQLRKKLKVQ 363
TSL +L+K + K+ P+ + +K+P + FK++ KF +LRK L Q
Sbjct: 205 TSLLNLLKDV-DKMSEPLEQLQKLPSVFEPFKEVSKFMRLRKTLPHQ 250
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 32.7 bits (71), Expect = 0.27
Identities = 26/118 (22%), Positives = 39/118 (33%)
Frame = +3
Query: 339 TKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPV 518
TKK+ P K+ S P + +P KK++ +K +K P
Sbjct: 1653 TKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPE 1712
Query: 519 KPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQTNSKTPIKQKEE 692
K + P + P+KS K P K+ K+P K EE
Sbjct: 1713 KSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKK--EKSPEKSAEE 1768
Score = 30.3 bits (65), Expect = 1.4
Identities = 29/133 (21%), Positives = 39/133 (29%)
Frame = +3
Query: 297 PKKPTIQTNGKVPATKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXX 476
PK PT K P E P K KP KK +P K
Sbjct: 1539 PKSPT--KKDKSPEKSITEEIKSPVKKEKSPEKVEEKPASPTKKEK-SPEKPASPTKKSE 1595
Query: 477 XXXXVTSKPKKQPVKPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQ 656
+K +K P K + P + P+KS K P K+
Sbjct: 1596 NEVKSPTKKEKSPEKSVVEELKSPKEKSPEKADDKPKSPTKKEKSPEKSATEDVKSPTKK 1655
Query: 657 TNSKTPIKQKEES 695
S +++K S
Sbjct: 1656 EKSPEKVEEKPTS 1668
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 32.7 bits (71), Expect = 0.27
Identities = 26/118 (22%), Positives = 39/118 (33%)
Frame = +3
Query: 339 TKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPV 518
TKK+ P K+ S P + +P KK++ +K +K P
Sbjct: 1653 TKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPE 1712
Query: 519 KPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQTNSKTPIKQKEE 692
K + P + P+KS K P K+ K+P K EE
Sbjct: 1713 KSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKK--EKSPEKSAEE 1768
Score = 30.3 bits (65), Expect = 1.4
Identities = 29/133 (21%), Positives = 39/133 (29%)
Frame = +3
Query: 297 PKKPTIQTNGKVPATKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXX 476
PK PT K P E P K KP KK +P K
Sbjct: 1539 PKSPT--KKDKSPEKSITEEIKSPVKKEKSPEKVEEKPASPTKKEK-SPEKPASPTKKSE 1595
Query: 477 XXXXVTSKPKKQPVKPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQ 656
+K +K P K + P + P+KS K P K+
Sbjct: 1596 NEVKSPTKKEKSPEKSVVEELKSPKEKSPEKADDKPKSPTKKEKSPEKSATEDVKSPTKK 1655
Query: 657 TNSKTPIKQKEES 695
S +++K S
Sbjct: 1656 EKSPEKVEEKPTS 1668
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 32.7 bits (71), Expect = 0.27
Identities = 26/118 (22%), Positives = 39/118 (33%)
Frame = +3
Query: 339 TKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPV 518
TKK+ P K+ S P + +P KK++ +K +K P
Sbjct: 1653 TKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPE 1712
Query: 519 KPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQTNSKTPIKQKEE 692
K + P + P+KS K P K+ K+P K EE
Sbjct: 1713 KSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKK--EKSPEKSAEE 1768
Score = 30.3 bits (65), Expect = 1.4
Identities = 29/133 (21%), Positives = 39/133 (29%)
Frame = +3
Query: 297 PKKPTIQTNGKVPATKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXX 476
PK PT K P E P K KP KK +P K
Sbjct: 1539 PKSPT--KKDKSPEKSITEEIKSPVKKEKSPEKVEEKPASPTKKEK-SPEKPASPTKKSE 1595
Query: 477 XXXXVTSKPKKQPVKPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQ 656
+K +K P K + P + P+KS K P K+
Sbjct: 1596 NEVKSPTKKEKSPEKSVVEELKSPKEKSPEKADDKPKSPTKKEKSPEKSATEDVKSPTKK 1655
Query: 657 TNSKTPIKQKEES 695
S +++K S
Sbjct: 1656 EKSPEKVEEKPTS 1668
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 32.7 bits (71), Expect = 0.27
Identities = 26/118 (22%), Positives = 39/118 (33%)
Frame = +3
Query: 339 TKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPV 518
TKK+ P K+ S P + +P KK++ +K +K P
Sbjct: 1653 TKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPE 1712
Query: 519 KPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQTNSKTPIKQKEE 692
K + P + P+KS K P K+ K+P K EE
Sbjct: 1713 KSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKK--EKSPEKSAEE 1768
Score = 30.3 bits (65), Expect = 1.4
Identities = 29/133 (21%), Positives = 39/133 (29%)
Frame = +3
Query: 297 PKKPTIQTNGKVPATKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXX 476
PK PT K P E P K KP KK +P K
Sbjct: 1539 PKSPT--KKDKSPEKSITEEIKSPVKKEKSPEKVEEKPASPTKKEK-SPEKPASPTKKSE 1595
Query: 477 XXXXVTSKPKKQPVKPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQ 656
+K +K P K + P + P+KS K P K+
Sbjct: 1596 NEVKSPTKKEKSPEKSVVEELKSPKEKSPEKADDKPKSPTKKEKSPEKSATEDVKSPTKK 1655
Query: 657 TNSKTPIKQKEES 695
S +++K S
Sbjct: 1656 EKSPEKVEEKPTS 1668
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 31.9 bits (69), Expect = 0.47
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Frame = +3
Query: 324 GKVP--ATKKKA---EXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXX 488
GK P ++KK A E E PK+ + P ++ KK AK++
Sbjct: 520 GKTPRKSSKKSAAVEESDNEEEDVEESPKKRTSPRKSSKK---RAAKEESEESSDNEVEE 576
Query: 489 VTSKPKKQPVKPIKTNPVRPPQXXXXXXXXXXXXXXXXXXVPQKSVVTPAKLPVKQTNSK 668
V PKK K ++ +P +P P+K TP K K++ +K
Sbjct: 577 VEDSPKKND-KTLRKSPRKPAAKVESEESFGNEEEEEVEESPKKKGKTPRKSS-KKSAAK 634
Query: 669 TPIKQKEESSDDD 707
++ EESSDD+
Sbjct: 635 ---EESEESSDDE 644
>U40797-14|AAB37544.2| 200|Caenorhabditis elegans Hypothetical
protein C28C12.1 protein.
Length = 200
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 390 PKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPVK 521
PK AS+P A+ L++TPAKK E K +++PVK
Sbjct: 39 PKPASQP--ALSPLDLTPAKKVEEKVIEEKKVENNPKKEEEPVK 80
>AC024849-1|AAK68546.2| 374|Caenorhabditis elegans Hypothetical
protein Y67D8B.1 protein.
Length = 374
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = +1
Query: 178 KLKRNHVPKTNKPS*TSLP--SLIKQIKQKLKVPVTRAKKMPLRNQQFKQMGKF--QQLR 345
+L +N + K + S T + S K++ + L+ +T A+ + Q GK+ LR
Sbjct: 78 QLIKNKLEKDFEGSGTKIRNCSSCKEVSENLQFCITCAQSQDILKQPSNN-GKWIAVPLR 136
Query: 346 KKLKVQILVAPMMSHQNRHLSPTKQLKNL 432
K L + L ++ H+ L+P L+NL
Sbjct: 137 KDLSIICLSCGVLEHKEHELAPIDMLENL 165
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 28.3 bits (60), Expect = 5.7
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Frame = +1
Query: 295 PLRNQQFKQMGKFQQLRKKLKVQILVAPMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTA 474
PL Q Q + ++ + Q VA + R L P QL L + + HQM
Sbjct: 971 PLPPIQLPQRSQAPAPSRQQQQQPPVAYQVQFNGRPLPPM-QLPPLQNPHNQQQQHQMLH 1029
Query: 475 TVMM---MLRQNLKSSLLNQ*KQIQYVHHKKKRNHQMTIVVMMNLRKRFHKN 621
M ++Q + + Q + +Q HH ++++HQ R R H N
Sbjct: 1030 QSQMNYQQVQQVQQVQHVQQQQNLQNQHHHQQQHHQQNQQQAPGNRSRSHSN 1081
>Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical
protein ZC15.5 protein.
Length = 597
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 60 ILDKNFKMNLTTEIQADVNSLVHQYLEKIDKSLAQTFMKKTKAKPRAKNQ 209
I + NF+ ++ E + + +HQ EK+ + TF + T+ P +N+
Sbjct: 269 IEEDNFESTISIEKCSKLGIFLHQNAEKLARCQVDTFQRITRDLPPFRNK 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,531,984
Number of Sequences: 27780
Number of extensions: 229203
Number of successful extensions: 885
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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