Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17d09
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 30 0.28
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 30 0.28
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 3.4
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 27 3.4
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 3.4
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 3.4
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 3.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 4.5
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 5.9
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 26 5.9
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 25 7.8
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 25 7.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.8
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 30.3 bits (65), Expect = 0.28
Identities = 29/114 (25%), Positives = 45/114 (39%)
Frame = +2
Query: 266 AQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEY 445
A S N ++ ++ S + + E Q L L FIT S+ DSI E + D
Sbjct: 559 ANESISSNHEKLMESESDRLSKKWENP-QLLAQLKSRFITGSLLDSIEGQEEVSQDD--- 614
Query: 446 DDGVDFDVYDEYEPSSHWSNMTVSDAKALLQNPPKDRVMFLDTVTTNNVSSKYE 607
++G DF+ ++ E SS S + +N + T N K E
Sbjct: 615 EEG-DFEDLEDEENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEE 667
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 30.3 bits (65), Expect = 0.28
Identities = 22/79 (27%), Positives = 42/79 (53%)
Frame = +2
Query: 110 FTPIEDSAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKN 289
+T +++ L+FER +R D+ V V KF+F S LQE+ ++ +K + + + +N
Sbjct: 264 YTNVQNEYELMFERDTEIRKAEDQTAVPVAKFSFVS-LQEVGDV-AKDAVIDV-IGVLQN 320
Query: 290 VRQIKQNRSSNIKTRIEKQ 346
V ++Q S +K+
Sbjct: 321 VGPVQQITSRATSRGFDKR 339
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 533 LQNPPKDRVMFLDTVTTNNVSSKYEEYI 616
LQ+PPK+R++F D T +E YI
Sbjct: 241 LQSPPKNRIVFCDGCNTPFHQLCHEPYI 268
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 101 RITFTPIEDSAGLVFERMYGLRHHTDER 184
RI F P+ED + +VF ++ ++ DE+
Sbjct: 290 RIVFRPVEDHSHIVFAQLTHYKNKKDEK 317
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +2
Query: 128 SAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQ 307
S LVF YG R T + + S E++ +K K E AQ+S +N+ Q
Sbjct: 592 SIHLVFRSAYGDREITRRTDPLPSRSIYFSENVEMDLVKRKEEQLNAQLSQLENL----Q 647
Query: 308 NRSSNIKTRIEKQLQFLTPLN 370
N ++ ++ + L+ N
Sbjct: 648 NEERKLQEKVNEHESLLSRTN 668
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 152 MYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKT 331
MY + H TD + V NF + L+ +E + +++ +++ KQ+ + N
Sbjct: 686 MYIVTHETDWKVVQYILINFTNQLRNTKMFTKTVEALQLLLNSLRDIINGKQSLNINFSD 745
Query: 332 --RIEKQLQFLTPLNKNFITY 388
RIE L L+ + + Y
Sbjct: 746 FFRIEDLLVSLSKILSVLMVY 766
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 3.4
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 2/159 (1%)
Frame = +2
Query: 224 QELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDS 403
+EL ++ K +LY+ Q + K + + +NIK+ + K+L+ +N S++
Sbjct: 1093 KELESLNDKDQLYQLQATKNKELEAKVKECLNNIKS-LTKELENKEEKCQNLSDASLK-Y 1150
Query: 404 ISSNEVLDNIDLEYDDGVDFDVYDEYEPSSHWSNMTVSDAKALLQN-PPKDRVMFLDTVT 580
I E+ +N+ L+ D + Y + + D Q K R + + +
Sbjct: 1151 IELQEIHENLLLKVS---DLENYKKKYEGLQLDLEGLKDVDTNFQELSKKHRDLTFNHES 1207
Query: 581 TNNVSSKYEEYIDCIVS-NRTVENECMFLAXMMNVLNDK 694
S+ Y+E + S N+ + N+ L +N L+ K
Sbjct: 1208 LLRQSASYKEKLSLASSENKDLSNKVSSLTKQVNELSPK 1246
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 290 VRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEYDDGV 457
+R++K+N S + +IEK++ + + ++ IS E+L+ L DD V
Sbjct: 1069 LRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGGDDTV 1124
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +3
Query: 390 LW-KTAFQATKCWTTSIWNMTTALI 461
LW + A TK W T IWN L+
Sbjct: 666 LWNENAIMGTKRWLTKIWNCVHQLL 690
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 671 CXLKTCTRFQRYGCSQCSLCILRICCSRCWW 579
C C R + CSQC+ CILR+ C W
Sbjct: 102 CQEYKCDR--SHHCSQCNKCILRM-DHHCMW 129
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 596 CSRCWW*PCPKTLLGLWAGFGAKLSRR 516
C++ W CPKT+ ++ KLS R
Sbjct: 268 CNQIWAGKCPKTIRMFYSNLYKKLSHR 294
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 164 RHHTDERFVFVKKFN-FASVLQELNNI 241
R T+ERF+F K N F S++Q NI
Sbjct: 254 RSETEERFLFTKTCNVFRSLIQIQKNI 280
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 7.8
Identities = 21/86 (24%), Positives = 42/86 (48%)
Frame = +3
Query: 228 SSIISNLKLNYMKRKFRLAKTSDK*NKTDRVTSKPALKSSCSF*RRLTKISSHTLWKTAF 407
S+I+S+ ++ + A S + T+ T +L S S R ++ S++ + T+F
Sbjct: 758 SAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNE-YNTSF 816
Query: 408 QATKCWTTSIWNMTTALILTFTMNTN 485
A +T+ + TT+L +N+N
Sbjct: 817 HAPTVSSTTSSSSTTSLAANKGVNSN 842
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,663
Number of Sequences: 5004
Number of extensions: 48769
Number of successful extensions: 211
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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