Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17d08
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0524 - 3845637-3845727,3845803-3845896,3846415-3846497,384... 67 1e-11
04_01_0383 + 5085697-5085724,5085816-5085927,5087249-5087285,508... 55 5e-08
05_07_0299 - 29073900-29073984,29074125-29074158,29074269-290743... 54 9e-08
01_05_0685 + 24273331-24273569,24275429-24275465,24275739-242758... 52 5e-07
04_04_1531 - 34184899-34185030,34185130-34185240,34185344-341854... 36 0.019
04_04_1530 - 34182235-34182336,34182436-34182543,34183627-341837... 33 0.18
06_03_0449 + 20907491-20910146,20910313-20910782 28 5.0
03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301 27 8.7
>01_01_0524 -
3845637-3845727,3845803-3845896,3846415-3846497,
3846587-3846737,3847113-3847217,3847351-3847420,
3847551-3847587,3848155-3848257,3848441-3848480
Length = 257
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/99 (33%), Positives = 54/99 (54%)
Frame = +2
Query: 305 TSITINFNKMSKLGALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVK 484
+S+ K + G H+ + GA + AT+++ HG G GA W +L+ E P++K
Sbjct: 8 SSVASGGGKRLEYGRTHVVRPKGAHK-ATIVWLHGLGDNGAS---WSQLL-ETLPLPNIK 62
Query: 485 VLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSL 601
+ PTAP +P GG S WFD A+++ D P+ ++ L
Sbjct: 63 WICPTAPTRPVAVFGGFPSTAWFDVADLSEDAPDDVEGL 101
>04_01_0383 +
5085697-5085724,5085816-5085927,5087249-5087285,
5087512-5087581,5087704-5087808,5088022-5088172,
5088257-5088339,5089152-5089372,5089465-5089501,
5089668-5089753
Length = 309
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/86 (33%), Positives = 46/86 (53%)
Frame = +2
Query: 344 GALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 523
G +I + G Q AT+++ HG G GA W +L+ + S P++K + PTA +P T
Sbjct: 20 GRTYIVRPKGRHQ-ATIVWLHGLGDNGAS---WSQLL-DSLSLPNIKWICPTAATRPVTA 74
Query: 524 AGGMMSNVWFDRANITPDVPEKLDSL 601
GG WFD +I+ D + ++ L
Sbjct: 75 FGGFPCTAWFDVEDISVDGRDDIEGL 100
>05_07_0299 -
29073900-29073984,29074125-29074158,29074269-29074351,
29074457-29074607,29074853-29074957,29075099-29075168,
29075374-29075410,29076732-29076843,29076956-29076983
Length = 234
Score = 54.0 bits (124), Expect = 9e-08
Identities = 28/86 (32%), Positives = 45/86 (52%)
Frame = +2
Query: 344 GALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 523
G ++ + G Q AT+++ HG G GA W +L+ + S P++K + PTA QP T
Sbjct: 20 GRTYVVRPKGRHQ-ATIVWLHGLGDNGAS---WSQLL-DSLSLPNIKWICPTAATQPVTA 74
Query: 524 AGGMMSNVWFDRANITPDVPEKLDSL 601
GG WFD + + D + ++ L
Sbjct: 75 FGGFPCTAWFDVEDTSVDGRDDIEGL 100
>01_05_0685 +
24273331-24273569,24275429-24275465,24275739-24275808,
24275978-24276082,24276205-24276355,24276454-24276536,
24276619-24276712,24276796-24276883
Length = 288
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = +2
Query: 344 GALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 523
G ++ + G Q AT+++ HG G GA W +L+ + P++K + PTAP +P
Sbjct: 53 GRTYVVRPKGRHQ-ATIVWLHGLGDNGAS---WSQLL-DSLPLPNIKWICPTAPTRPVAA 107
Query: 524 AGGMMSNVWFDRANITPDVPEKLDSL 601
GG WFD + + D + ++ L
Sbjct: 108 FGGFPCTAWFDVEDTSVDGRDDIEGL 133
>04_04_1531 -
34184899-34185030,34185130-34185240,34185344-34185465,
34185541-34185664,34185815-34185867,34185984-34186146
Length = 234
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +2
Query: 392 VIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANIT 571
V++ HGSG TG + + V V+ FPTAP GG + WF
Sbjct: 10 VLWLHGSGQTGEESRAQVAPYFAAPELASVRFSFPTAPTSSIPCYGGEVITAWF----AI 65
Query: 572 PDVP 583
P+VP
Sbjct: 66 PEVP 69
>04_04_1530 -
34182235-34182336,34182436-34182543,34183627-34183748,
34183817-34183961,34184045-34184097,34184187-34184478
Length = 273
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 368 SGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNV 547
+ A+ + V++ HG G +G E +R F K FP+AP P + G +
Sbjct: 46 AAARNRSFVLWLHGLGDSGP-ANEPIRNFFSAPEFRLTKWAFPSAPNSPVSCNHGAVMPS 104
Query: 548 WFD 556
WFD
Sbjct: 105 WFD 107
>06_03_0449 + 20907491-20910146,20910313-20910782
Length = 1041
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 491 FPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSL 601
F AP+ P ++ +W + NIT ++PE SL
Sbjct: 214 FAPAPVPPAFAKLTKLTYLWMSKMNITGEIPEAFSSL 250
>03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301
Length = 272
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -3
Query: 600 NESSFSGTSGVILALSNQTLLIIPPAGVYGCKGAVGNKTFTCGKENC--STINLT 442
+ SS++ TS ++ N+ L GC G +FTC +NC ST N T
Sbjct: 159 SNSSYTVTSFTLVFEFNKGTLQNLYWKANGCSACSGQPSFTCVDQNCAISTANCT 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,111,963
Number of Sequences: 37544
Number of extensions: 278460
Number of successful extensions: 564
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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