Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17d08
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101319-1|AAC69354.2|  334|Caenorhabditis elegans Hypothetical ...    29   2.6  
U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular l...    28   5.9  
AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine r...    28   5.9  

>AF101319-1|AAC69354.2|  334|Caenorhabditis elegans Hypothetical
           protein K08D9.4 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
 Frame = +2

Query: 329 KMSKLGALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFP---T 499
           ++  L A++    S      TVI FHG+  +  D K +VR  +E  +   + + +P    
Sbjct: 54  RLVDLNAVYEDSLSSGSPLGTVIGFHGTPGSHRDFK-YVRQRLEHMNIRFIGINYPGFKQ 112

Query: 500 APLQPYTPAGGMMSNVWFDRANITPDVPEKL 592
            P  P    G    N + +      DVP K+
Sbjct: 113 TPAYPGQHFGNWERNSYSEALLNELDVPGKV 143


>U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular
           lectin protein 2 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +2

Query: 224 YNLIKYDQKKELSIPNYI**IRTYLPETSITINFNKMSKLGALHITKHSGAKQTATVIFF 403
           ++LIK        IPN+     T++    I +  ++ SK GAL  T+   ++     + F
Sbjct: 49  HSLIKPYTGSGADIPNWNIIGSTFVSSNQIRLTADEQSKAGALWNTQPVWSRDWELQVSF 108

Query: 404 HGSGSTG 424
             +GSTG
Sbjct: 109 KVTGSTG 115


>AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine
           receptor, class i protein21 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 79  SYFLSFIVYQTIKVRRFSRNLSFYI-VINFDEIG*VIGSHYTRFI 210
           S F++ I+Y T+++    +NL  ++  +NF +    +GS   +F+
Sbjct: 203 SIFIAIIIYSTVRMINILKNLEKHVSAVNFKKHKAAVGSLIAQFL 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,065,472
Number of Sequences: 27780
Number of extensions: 273782
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)