Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17d06
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   0.36 
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   0.83 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   0.83 
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    26   1.5  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   1.9  
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual         26   1.9  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   2.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   2.5  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   3.4  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   4.4  
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   4.4  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   4.4  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    25   4.4  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   4.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    24   7.8  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    24   7.8  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 0.36
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 257 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 129
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 102 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 197
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +3

Query: 3   KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 182
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 183 LSASIQASLPSSEIYRQL 236
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 204 SLPSSEIYRQLVDSRHVSSDSFGVY 278
           +L  S I+R  + S HVSS S GVY
Sbjct: 2   TLLDSSIFRFRLSSLHVSSRSLGVY 26


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 268 KESEETWRESTNWR*ISEEG 209
           KE  E W  + NW+  SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828


>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 225 YRQLVDSRHVSSDSFGVYVKS*SLILHSFGLLV 323
           YRQLVD R ++ D F  + K+    LH   + V
Sbjct: 34  YRQLVDGRELTLDDFISHAKALRTHLHRLDINV 66


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 27  LVTHKELALKVSSIIGTRVYVFDPSCY 107
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 242 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 141
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 150 RTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVY 278
           R +LKD     LS S+  SLPS     Q+  +  +S +    Y
Sbjct: 57  RKILKDVSLKRLSKSLDRSLPSENTIDQISFNHAMSEEDASGY 99


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 93  DPSCYFSTPPFDTVLYDNIRT 155
           DP+ Y    PFDTV  D + T
Sbjct: 706 DPAAYDKISPFDTVDIDGLTT 726


>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 204 SLPSSEIYRQLVDSRHVSSDSFGVYVKS*SLILHSFGLLVSL 329
           S P   I+R L+ S H+S  S    V    L++HS   LVS+
Sbjct: 6   SQPPCNIFRPLILSMHLSPVSILSPVLLIYLVIHSQNELVSM 47


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 215 LRDLPPVGRFSPCFFRLLWSLRKILIPYSSQFW 313
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 1   IKSKSPXXXXXXXRNWPSRFLLS*APESTSSIPPATFQ 114
           ++  SP       R W S+F+ S A +    + P T Q
Sbjct: 116 LRLDSPNELKENIREWSSKFMNSKASQKQQMLSPETMQ 153


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 167 QQNCS-SLCIYSSFSPFLRDLPPVGRFSP 250
           Q+ C+  LC YS  SP  R+LP    F P
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHP 523


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 49  PSRFLLS*APESTS-SIPPATFQLLPSIPYCTTTS 150
           P+  L+     STS S PP T  L+ ++P  TTT+
Sbjct: 172 PATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTT 206


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 129 TVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLV 239
           TVL + I+ V+K    +   A+   +LP   +Y QL+
Sbjct: 360 TVLSNGIKKVIKTITASSRHANYAKALPRCSVYLQLL 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,527
Number of Sequences: 5004
Number of extensions: 23973
Number of successful extensions: 85
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)