Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17d06
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 1.3
05_01_0493 + 4113869-4116728,4116859-4117370 28 2.3
12_01_0302 - 2286171-2286341,2286747-2286968 27 4.0
09_04_0220 - 15813809-15815380 27 4.0
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 27 4.0
11_02_0038 - 7631462-7634428,7635975-7636250 27 5.3
09_02_0400 - 8574836-8575121,8575473-8575549 26 7.1
03_05_0150 - 21283723-21284008,21284338-21284414 26 7.1
02_04_0192 + 20795659-20796309 26 7.1
01_01_0490 + 3620523-3623403,3623524-3623996 26 9.3
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -2
Query: 284 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 138
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 114 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 257
+PP+D LY + + D +L A++ S E+YR + S V+
Sbjct: 753 SPPWDVTLYQKLEIGVSDVARSLTPANVIGHGWSGEVYRASMPSSGVT 800
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 276 RLQRSRKKHGENLPTGGRSRRKGEKLE*MQREEQ 175
RL+R RK + ++ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0220 - 15813809-15815380
Length = 523
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = +3
Query: 42 ELALKVSSIIGTRVYVFDPSCYFSTPPFDTV----LYDNIRTVLKDNKTALLSASIQASL 209
EL V+ ++G F P CYF + + +YD ++ L + A + S
Sbjct: 29 ELRAAVARLLGRATRAFSPYCYFDVTETEGMGTNEIYDAVQLYLSSSAAPAAGARLTLSR 88
Query: 210 P 212
P
Sbjct: 89 P 89
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 81 VYVFDPSCYFSTPPFDTVLYD-NIRTVLK-DNKTALLSASIQAS 206
V + D SC TP FDT + + N+ T K + A+L SI AS
Sbjct: 2535 VSILDSSCGMVTPIFDTTIANINLATHGKFETMNAVLICSISAS 2578
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 102 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQ 200
CYF P + + +R + NKT +LS+ ++
Sbjct: 585 CYFDQLPLEPTTWSKLRRISIVNKTDMLSSVVE 617
>09_02_0400 - 8574836-8575121,8575473-8575549
Length = 120
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 85 TSSIPPATFQLLPSIPYC 138
T+S+PP++ QLL S P C
Sbjct: 100 TASLPPSSIQLLASPPRC 117
>03_05_0150 - 21283723-21284008,21284338-21284414
Length = 120
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 85 TSSIPPATFQLLPSIPYC 138
T+S+PP++ QLL S P C
Sbjct: 100 TASLPPSSIQLLASPPRC 117
>02_04_0192 + 20795659-20796309
Length = 216
Score = 26.2 bits (55), Expect = 7.1
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 155 GS*GQQNCSSLCIYSSFSPFLRDLPPVGRFSPCFFRLLWS-LRKILIPYS 301
G G + S SS SPF+ LPP SP F R L S LR +P+S
Sbjct: 33 GGGGSSSSFSSTNSSSSSPFVSFLPPPTSPSP-FHRFLPSPLRASSVPFS 81
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 117 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 257
PP+D LY + + D +L A++ S +YR + S V+
Sbjct: 765 PPWDVTLYQKLEISVGDVARSLTPANVIGQGWSGAVYRASIPSTGVA 811
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,763,566
Number of Sequences: 37544
Number of extensions: 162905
Number of successful extensions: 436
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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