Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17d06
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    28   1.6  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    27   3.7  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    27   3.7  
Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    26   8.5  

>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 87  VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHV-SSD 263
           ++D +C F+   +  + YD I T  +      LS S  AS+ S    R L+ +  V S  
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVFSIF 294

Query: 264 SFGVYVKS*SLIL 302
           + G +  S  LIL
Sbjct: 295 AIGGFAFSDDLIL 307


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 232 WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 125
           W  +   GR   + A     L SLRT+LMLS N+++
Sbjct: 50  WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 232 WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 125
           W  +   GR   + A     L SLRT+LMLS N+++
Sbjct: 50  WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85


>Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical
           protein F55D12.2 protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +3

Query: 165 DNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVKS 287
           +N  +LL A +  +LP S ++  L+D+RH+       Y+++
Sbjct: 42  ENLVSLL-ALLSDTLPPSTLFTVLLDTRHIQLKQLKFYLRA 81


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 294 GIKILRRLQRSRKKHGENLPTGGRSRRKGE 205
           G  +  R    RKKHG ++   GR RR G+
Sbjct: 97  GNDMKHRENMDRKKHGTHVDHHGRVRRNGD 126


>Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical
           protein W03C9.6 protein.
          Length = 500

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 257 FRLLWSLRKILIPYSSQFWVVSFIAL*Q 340
           F  LW++  I++   S +W+ +F  L Q
Sbjct: 471 FETLWTINGIVVALGSIYWIANFSRLRQ 498


>U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical
           protein T07F8.1 protein.
          Length = 822

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 273 LQRSRKKHGENLPTGGRSRRKGEKLE 196
           + + RK+HG+NL   G + +K ++LE
Sbjct: 2   VSKKRKEHGKNLGVLGPAAKKQKRLE 27


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 288 KILRRLQRSRKKHGENLPTGGRSRRKGEKLE*MQREEQF 172
           ++L  L   +K  GE +P  GRS     K+E M  +  F
Sbjct: 761 QLLNTLNEMKKALGEGVPKSGRSLNSTCKIETMTNKTPF 799


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,394,732
Number of Sequences: 27780
Number of extensions: 134327
Number of successful extensions: 388
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)