Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17d05
         (238 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    20   3.6  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    19   8.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    19   8.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    19   8.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    19   8.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    19   8.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    19   8.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   8.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   8.3  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 78  ISACTSRCFFNNNSQDMHSRNN 13
           IS+ ++R   NNN+   +  NN
Sbjct: 82  ISSLSNRTIHNNNNYKYNYNNN 103


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 78  ISACTSRCFFNNNSQDMHSRNN 13
           IS+ +++   NNN+   +  NN
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNN 103


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 78  ISACTSRCFFNNNSQDMHSRNN 13
           IS+ +++   NNN+   +  NN
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNN 103


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 78  ISACTSRCFFNNNSQDMHSRNN 13
           IS+ +++   NNN+   +  NN
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNN 103


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 78  ISACTSRCFFNNNSQDMHSRNN 13
           IS+ +++   NNN+   +  NN
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNN 103


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 105 IRNVTLFIHISACTSRCF 52
           IRN TLF   S   +R F
Sbjct: 281 IRNYTLFNENSEAAARSF 298


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 78  ISACTSRCFFNNNSQDMHSRNN 13
           IS+ +++   NNN+   +  NN
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNN 336


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 153 HKYVTPHNFTIHFKRNIRNVTLFIHISACT 64
           H    PH  T+  K  I++  L IH+   T
Sbjct: 170 HTGERPHKCTVCSKTFIQSGQLVIHMRTHT 199


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +1

Query: 49   EKTTRSARRNVNKQCHVTNISFK 117
            E +T     NVNK C +     K
Sbjct: 1673 EMSTWGYHHNVNKHCTIHRTQVK 1695


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,537
Number of Sequences: 438
Number of extensions: 1208
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)