Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c19
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    30   0.37 
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    27   2.6  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    26   4.6  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    26   6.0  
SPAC824.06 |tim14||TIM23 translocase complex subunit Tim14|Schiz...    25   8.0  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   8.0  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.0  

>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 499 DRLNNENTSTDYDTEDEERVNTFNSRKRRV-VAKRAFNSKSKKIPIGKVVSTPRKRLK 669
           D L N+ T  DYD+EDEE  N    +  +V  +K+    K +K  + K    P+K  K
Sbjct: 376 DTLQNDFTIYDYDSEDEEYNNPSTQKTEKVSQSKKGAKVKEEK-GLKKDRKLPKKMRK 432


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 369 FERFSSFMHSNVFVAAVHFMI 307
           FER  SF+H+N  V A HF +
Sbjct: 558 FERAISFLHTNYPVEATHFAV 578


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 256 EKMPPRAKKLFVEAFTKYHKMNGGDEDIAMHKARKALEE 372
           E++ P++    V AF +Y K++  +ED   H  ++  E+
Sbjct: 47  EEIKPKSGDRLVAAFEEYEKLHPVEEDSTAHVNKEEAEK 85


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 574 RKRRVVAKRAFNSKSKKIPIGKVV 645
           RKR++ A     S+ K+I +GKVV
Sbjct: 68  RKRKIEAGEVVKSQKKRIRLGKVV 91


>SPAC824.06 |tim14||TIM23 translocase complex subunit
           Tim14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 274 AKKLFVEAFTKYHKMNGG 327
           A K+ V+AF KY  +NGG
Sbjct: 17  AGKIGVDAFRKYRNLNGG 34


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 580 RRVVAKRAFNSKSKKIPIGKVVSTPRKRL 666
           RR+V +     KS+ IP+G++    R+R+
Sbjct: 693 RRIVGRYGLTGKSQVIPMGQLSDGQRRRV 721


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 589 VAKRAFNSKSKKIPIGKVVSTPRKRLKQHTNTPPHYD 699
           ++K AF SKS+   I    + P ++   +  TPPH D
Sbjct: 1   MSKSAFTSKSQLKGIDGSFNDPFRQPSMNLPTPPHDD 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,251
Number of Sequences: 5004
Number of extensions: 40490
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)