Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c19
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59)             30   2.1  
SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)                     29   4.9  
SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   6.4  
SB_3402| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 484 KTKSNDRLNNENTSTDYDTEDEERVNTFNSRKR-RVVAKRAFNSKSKKIPIGKVVSTPRK 660
           + K   + NN++ + + D   E+++      KR R   K  FNS  +++   K  ++ RK
Sbjct: 132 RKKVQSKTNNKSDNEEEDERQEKKIRKQKQEKRKRKTVKADFNSSEEEVSSQKTKASSRK 191

Query: 661 RLKQ 672
             K+
Sbjct: 192 DQKK 195


>SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59)
          Length = 1060

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/50 (26%), Positives = 31/50 (62%)
 Frame = +1

Query: 481 TKTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIP 630
           +K   +D+ ++EN+S++  + D+ER+ +  SR + V +  ++ S + + P
Sbjct: 196 SKPLFSDQDSSENSSSEDSSSDDERLQSLISRTKSVKSISSYTSVTSRTP 245


>SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)
          Length = 341

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/93 (23%), Positives = 39/93 (41%)
 Frame = +1

Query: 349 KARKALEEKYVKINTLKNSWIPRKAAYEIVRXXXXXXXXXXXXXTKTKSNDRLNNENTST 528
           K RK  E+K  +I    N WI +K   EI++              + +  +R   E +  
Sbjct: 153 KQRKLKEDKQKEIEEKINEWIDKKNK-EILKSKTSSQKLQEQKQAEKEEQNRTIEEKSKI 211

Query: 529 DYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKI 627
            +D    E++   +S+K+    ++A   K K I
Sbjct: 212 AFDKWMSEKLKR-DSKKKEEEERKAREEKDKLI 243


>SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 800

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 508 NNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSK--KIPIGKVVSTPRKRLKQHTN 681
           NN + +   DTE      + N   R +V +R  NSK+   +I I  VVS   +R K  T+
Sbjct: 52  NNRHENDPRDTELRRIYLSPNKNSRTLVLRRILNSKTSEDRIKIRDVVSNLSERRKNITS 111


>SB_3402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 217 LITMYQIPDMLYNEKMPPRAKKLFVEAFTKYHKMN 321
           L T  Q+     N  +P   KKLF+  FTKY KMN
Sbjct: 86  LPTTVQLQKPTTNNFIP--LKKLFLNKFTKYFKMN 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,111,748
Number of Sequences: 59808
Number of extensions: 279379
Number of successful extensions: 851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)