Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c19
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09610.1 68414.m01078 expressed protein contains Pfam profile...    30   1.3  
At1g02110.1 68414.m00137 proline-rich family protein contains pr...    30   1.7  

>At1g09610.1 68414.m01078 expressed protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 282

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +1

Query: 250 YNEKMPPRAKKLFVEAFTKYHKMNGGDEDIAMHKARKALEEKYVK 384
           Y ++ P R   ++       ++  GG+ D+ +H   + +E+K+ K
Sbjct: 201 YYDEAPGRMTAIYTAGMMARNRKQGGETDVFVHDVNREIEDKFSK 245


>At1g02110.1 68414.m00137 proline-rich family protein contains
           proline-rich domain, INTERPRO:IPR000694
          Length = 679

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = -3

Query: 377 YFSSSAFLALCIAMSSSPPFIL*YFVNASTNNFLARGGIFSL 252
           Y SSS F  L  + +S PP  + Y ++AST N   +GG+ SL
Sbjct: 316 YHSSSVFSNLSASWTSKPPLAVKYKLDASTLND-EQGGLKSL 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,883,604
Number of Sequences: 28952
Number of extensions: 198477
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)