Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c18
         (251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    26   0.66 
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   1.5  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    24   2.7  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    23   4.7  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    23   6.2  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    23   6.2  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    23   6.2  

>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 168 RILCFSPSGWPKCAVVFNGSL-NDFLPIASV-TNAATTNSRIISFMV 34
           R LCFS +  PK + VF G L  DF  I  +  N   T+ R+  F++
Sbjct: 222 RKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVI 268


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 93  PIASVTNAATTNSRIISFMVFYIRQY 16
           P+A+    AT +S ++ F+VFY   Y
Sbjct: 241 PLAAFCGLATISSYLVLFIVFYHNTY 266


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 241 VYRYNLLQINFTLNQFVFVFVVRSSNLVFQ 152
           +Y  N+    F L  F    V  SSN+VFQ
Sbjct: 61  MYENNIYMRTFKLRPFAKSGVTNSSNVVFQ 90


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 146 EGLKHKIRRPYNKHEDKLIQCK 211
           + + H +RR YN  ED+ +  K
Sbjct: 297 KSIYHHVRRAYNPFEDRCVWSK 318


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 118 KNYGTFWPSRGAETQDSKTL 177
           +N   F P+ GA+ +DSK+L
Sbjct: 322 ENLDEFKPADGADNEDSKSL 341


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 1   EKATHILSNIEHHEADYPAVCRGRVCHTRYGQKIIERSIK 120
           EK+ H +  IE+        C G     R G  ++ER I+
Sbjct: 818 EKSEHFIY-IENQFFVTSTTCEGTTIENRVGDALVERIIR 856


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 10  THILSNIEHHEADYPAVCRGRVCHTRYGQKIIERSIKNYGTFWP-SRGAETQDSKTLQQT 186
           T++L  I  ++A YP + +GR     +   +      + G F+P S+ A  Q    L  T
Sbjct: 113 TNVLGPIHVYQAFYPLIKKGRSKIIVFTSSL----AGSMGAFFPSSQSAYGQSKAALNYT 168

Query: 187 RRQI 198
            ++I
Sbjct: 169 MKEI 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,124,038
Number of Sequences: 5004
Number of extensions: 20432
Number of successful extensions: 29
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)