Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c18
         (251 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   0.34 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   7.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   7.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    19   7.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   7.3  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               19   9.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    19   9.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   9.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    19   9.6  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 0.34
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 88  YGQKIIERSIKNYGTFWPSRGAE 156
           Y    +++ +KN  TFW +RG +
Sbjct: 196 YRSAALDQEMKNVLTFWMNRGVD 218


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 1   EKATHILSNIEHHEADYPAVCRGRVCH-TRYGQKIIERSIKNY 126
           +KA  +   + HHE DY  + RG +       Q II   I NY
Sbjct: 756 KKARSVNHLLTHHEYDY-ELSRGYIDEKILENQNIITHMILNY 797


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 143 PEGLKHKIRRP 175
           P  LKHKIR P
Sbjct: 456 PYTLKHKIRVP 466


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 97  SAHSECDKRGHDKQQDNQLHG 35
           S   E + RGH  Q  +  HG
Sbjct: 387 SDSGENNSRGHSGQSSSHHHG 407


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -2

Query: 148 LGMAKMCRSF*W 113
           +G+A  C++F W
Sbjct: 286 MGVASFCKAFPW 297


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 179 CKVFESCVSAPRDG 138
           CKV  S VSA  +G
Sbjct: 595 CKVIASSVSAGEEG 608


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 51  IISFMVFYIRQYM 13
           +I ++ F+I QYM
Sbjct: 121 VIDYVKFHITQYM 133


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 63  SWPRLSHSLWAENH 104
           +W  + +SLW EN+
Sbjct: 417 AWGFVGNSLWWENN 430


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 1   EKATHILSNIEHH 39
           EKA H +  I+HH
Sbjct: 452 EKALHNVMFIQHH 464


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +1

Query: 37  HEADYPAVCRGRVCHTRYGQKI 102
           H  DY  V        RY  K+
Sbjct: 683 HSGDYTCVAANPAAEVRYTAKL 704


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 120 FNGSLNDFLPIASVTNAATTNSRIIS 43
           F G +N F  +  +T   T+N+ +I+
Sbjct: 479 FIGIVNQFHILQFITKNGTSNNYLIN 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,474
Number of Sequences: 438
Number of extensions: 1397
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)