Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c15
         (155 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0592 - 11934238-11934249,11934755-11934835,11935166-119353...    25   6.3  
12_01_0375 + 2930807-2930838,2930936-2930999,2931127-2931333,293...    25   8.3  

>02_02_0592 -
           11934238-11934249,11934755-11934835,11935166-11935324,
           11936362-11936442,11936523-11936591,11937147-11937260,
           11937805-11937858,11938788-11938915,11940527-11940782
          Length = 317

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 139 NSSIL--RQHDTLQIINKLTRHKTND*QIYEKTIMRETRDQYEALWR 5
           NS+++   +HD   ++NK    K +  + Y ++ ++   D+ + LWR
Sbjct: 106 NSNLIGTMEHDIEILMNKYESTKKSQSKSYPESNVKALEDEVQLLWR 152


>12_01_0375 +
           2930807-2930838,2930936-2930999,2931127-2931333,
           2932385-2932458,2932831-2932858,2933268-2933456
          Length = 197

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 150 FLREIVLYYDNTIHYRLLTN*RDTKQTTNKYMK 52
           FLR IV+ Y+  I  RLL     + Q  + YMK
Sbjct: 41  FLRPIVMQYEPNIEQRLLHLRAKSGQLLSFYMK 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,268
Number of Sequences: 37544
Number of extensions: 31661
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)