Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c15
         (155 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical pr...    28   0.78 
U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical pr...    28   0.78 
Z81046-5|CAB02823.1|  225|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical ...    25   9.6  
AF047653-9|AAC04463.3|  299|Caenorhabditis elegans Serpentine re...    25   9.6  

>U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical
           protein F12D9.1b protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 36  SLIIVFSYIC*SFVLCLVNLLIICSV 113
           +L    +YIC S +LC+  L+++C V
Sbjct: 205 TLFSSITYICGSIILCIAVLMVVCVV 230


>U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical
           protein F12D9.1a protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 36  SLIIVFSYIC*SFVLCLVNLLIICSV 113
           +L    +YIC S +LC+  L+++C V
Sbjct: 227 TLFSSITYICGSIILCIAVLMVVCVV 252


>Z81046-5|CAB02823.1|  225|Caenorhabditis elegans Hypothetical
           protein C37E2.2a protein.
          Length = 225

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 2   SPPQSLVLIARFSHYCFFIYLLVVCFV 82
           +PP+++  +  FS    F+Y +++C+V
Sbjct: 135 TPPKTIASLI-FSAALVFVYFMIICYV 160


>U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical
           protein F55G1.6 protein.
          Length = 350

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 31  AFLSLLFFHIFVSRLFCV 84
           + LS+ FF I VS +FCV
Sbjct: 228 SLLSVFFFVIIVSTMFCV 245


>AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical
           protein Y66H1A.4 protein.
          Length = 244

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 5   PPQSLVLIARFSHYC 49
           PP+ +VL+  FSH C
Sbjct: 56  PPEEVVLVGVFSHQC 70


>AF047653-9|AAC04463.3|  299|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 30 protein.
          Length = 299

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 8   PQSLVLIARFSHYCFFIYLLVVCFVSR*FVNNL*CI 115
           P  L+ I     Y  F+  L+ CF+     NN+ C+
Sbjct: 92  PSQLISILFIEQYLQFVKSLIFCFMVVNRANNVICV 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,146
Number of Sequences: 27780
Number of extensions: 37305
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)