Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17c14
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 40 3e-04
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.068
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 31 0.21
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.36
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 1.9
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 27 3.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.4
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 3.4
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 3.4
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 4.4
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 26 4.4
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 5.9
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 5.9
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 25 7.8
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 7.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.8
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 39.9 bits (89), Expect = 3e-04
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 1/176 (0%)
Frame = -3
Query: 625 SKILSVLLSNSCVLRSSHS-LNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKS 449
S + SVL S+S + SS S + S T + S + +P+ ++ S S +L S + + S
Sbjct: 533 SPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFS-SVSSILSSSTSSPSSTS 591
Query: 448 TSIFKHL*YATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVS 269
SI +T+ S + SSS +S++ L +P + + S IIS S +S
Sbjct: 592 LSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILS 651
Query: 268 KGLMAFIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFLGSFSSGIKSALILL 101
+ SS S + I S+ V SS +L + S SS I S+ L+
Sbjct: 652 SSISTIPISSSLS-TYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLV 706
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 32.3 bits (70), Expect = 0.068
Identities = 50/191 (26%), Positives = 76/191 (39%)
Frame = -3
Query: 625 SKILSVLLSNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKST 446
S I S S+S +S +++ SS+ TS + + + S S S L+ + S+
Sbjct: 271 SIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSS-SFSSTLSSSSMSSS 329
Query: 445 SIFKHL*YATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSK 266
S F ++ +S S+ SSSF+STT SS + S S S S
Sbjct: 330 SSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSS 389
Query: 265 GLMAFIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFLGSFSSGIKSALILLELSDI 86
SS S + + KS SS + F N T S SS S+ L LS
Sbjct: 390 SSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNST--SSRSSSHSSSHSLSSLSSK 447
Query: 85 MVVACKFNKLI 53
++ + L+
Sbjct: 448 PILTASSSSLL 458
Score = 29.5 bits (63), Expect = 0.48
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 7/168 (4%)
Frame = -3
Query: 595 SCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YAT 416
S S S SS + TS + + S S +S + ++ S+ T
Sbjct: 172 SSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT 231
Query: 415 YFDLSFK--PSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVS----KGLMA 254
LS PST SSS S++ SS + +S S +I S S S ++
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 253 FIKSSFCSGVVNGKSIEKLSSSVHS-SGTLFRRNVTFLGSFSSGIKSA 113
SS S +I SSS S S TL +++ SFSS S+
Sbjct: 292 SSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.7 bits (66), Expect = 0.21
Identities = 21/98 (21%), Positives = 46/98 (46%)
Frame = +3
Query: 57 NLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQ 236
NL N ++ S+K + +I D PK +++ LN+VP + +DD +L + +
Sbjct: 333 NLANTESVNASDEGSDKSQKGIISDS--PKLLSIPLNNVPSKSLNDDITQDELNSSNADV 390
Query: 237 KDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNN 350
++ + E N+++ T ++ T D +++
Sbjct: 391 DEEVIETTS-LEEKNVDNQEFVTSISNGNQTLEDTSHS 427
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 29.9 bits (64), Expect = 0.36
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 150 VTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQ 311
VTL L VP+ + S DLPLT D+F + L I ++TEQ
Sbjct: 640 VTLTLEGVPDFKVYSNPISTDLPLTLQSPSDEFSTIYAWSDYLYIVGIDMETEQ 693
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 531 EVLRSIFVDEPFKLWLERNTHEFDNN 608
EV+ IF +K W E NT F N+
Sbjct: 318 EVIDKIFNGNAYKRWTEENTSNFSND 343
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 129 DENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQK 239
+E +P++V + L P E DDN ++ + E+K
Sbjct: 85 NEKEPRDVRISLTFQPNEYLQDDNLTLVKEVRIKEEK 121
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 288 SDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGL 398
SDI +T + P G N + KV + +EDE D L
Sbjct: 4375 SDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDEL 4411
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/62 (20%), Positives = 27/62 (43%)
Frame = +3
Query: 96 NSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFET 275
N + + ++ K + + +P ++ F+ID P+Q+D +NA+ F
Sbjct: 885 NEKGLSTEQRDEKKHAKVESFQRQEMPRSLFEEIFFAIDSLTPNPQQQDTVINAVPTFAP 944
Query: 276 LN 281
N
Sbjct: 945 YN 946
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Frame = +3
Query: 93 LNSNKIKADL-IPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPF 269
++S+ + L I ++DPK+ + EC + D + + P + + +
Sbjct: 1 MSSSSVSNTLSIETKSDPKDPAFVASQESTECNEHDTTQLSGSSSEPLENNSSLTRSTDD 60
Query: 270 ETLNIESDIIKTEQ-----TDAPATSGDDNNNRKVVDANEDEYTVDG 395
++ I S ++ + +D T ++NNN D E+ T G
Sbjct: 61 PSVEIRSKLVSPDNEANLLSDQNITISNENNNEN--DTTEEAETSSG 105
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +3
Query: 189 DDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDA 368
+++N + PL E D F + P L++ E PA+ +NNN DA
Sbjct: 641 NEENSELPPPLEPAEIGDPFRSVNDPRRVLSLPHMASADEDHRIPASDNQNNNNN---DA 697
Query: 369 N 371
N
Sbjct: 698 N 698
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 18 KINLCNIQFQ-SLINLLNLQATTIMSLNSNKIKADLIPDEND 140
K+ L +QFQ S+ NL+N Q ++ ++ +P+EN+
Sbjct: 314 KLELEVVQFQMSIANLINTQVEVTNTIEELGLRCRPLPNENE 355
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 5.9
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Frame = +3
Query: 156 LRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSG 335
L L +PE+ + SI + P + I+P E L +E K P G
Sbjct: 1367 LFLLEIPEKSYLTEKVSISMIFAHPSVSGIYETRIEPIERLILEMGSRKRFNNSVPGALG 1426
Query: 336 D----DNNNRKVVDANEDEYT-VDGLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKEYE 500
++ D ++++ + +DG+++ Y ++ V L M K+ Y+
Sbjct: 1427 KGFEFGFESKMFTDPSDNDVSYLDGVEMNYLYAFHFSISNRFVFSLFMPHLKKVEAIIYD 1486
Query: 501 QV------YTLGRQLYEVLRSIF 551
++ + ++YE LRS F
Sbjct: 1487 KLPGSDMSFPSISKIYEELRSKF 1509
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 204 SIDLPLTTPEQKDDFMNAIKPFETL-NIESDIIKT 305
S+D+P+ D ++A+K F+TL +++ +II T
Sbjct: 1174 SVDVPVIIKISLDSHLDALKMFDTLFHVKLEIITT 1208
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 426 YKCLKILVDFLVMYVSKETNMKEYEQVYTL 515
Y C+ + F++ +++KET E+V L
Sbjct: 437 YACINLFSSFMIFFLAKETKGLTLEEVNDL 466
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 270 ETLNIESDIIKTEQTDAPATSGDDNNN 350
ET N+ES K D A S +DNNN
Sbjct: 110 ETHNLESPAWKHADYDGVAASVNDNNN 136
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.8
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = -3
Query: 391 STVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSGVVNGK 212
+TV SSS +STT SSP + + + S S S + SS S +
Sbjct: 125 TTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 184
Query: 211 SIEKLSSSVHSSGT 170
S SSS SS +
Sbjct: 185 SSSSSSSSSSSSSS 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,035
Number of Sequences: 5004
Number of extensions: 56591
Number of successful extensions: 251
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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