Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17c13
(255 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70309-7|CAB54292.1| 209|Caenorhabditis elegans Hypothetical pr... 26 3.2
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 26 3.2
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 26 3.2
Z68160-4|CAA92292.1| 583|Caenorhabditis elegans Hypothetical pr... 26 4.3
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical... 26 4.3
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical... 26 4.3
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical... 26 4.3
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct... 26 4.3
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct... 26 4.3
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct... 26 4.3
U58754-5|AAB00672.2| 330|Caenorhabditis elegans Serpentine rece... 25 5.6
Z82272-1|CAB05218.1| 341|Caenorhabditis elegans Hypothetical pr... 25 7.4
AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin... 25 7.4
AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein. 25 7.4
AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein. 25 7.4
AC006680-6|AAK72300.1| 335|Caenorhabditis elegans Serpentine re... 25 7.4
Z81086-7|CAB03118.2| 316|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z74043-10|CAA98542.2| 653|Caenorhabditis elegans Hypothetical p... 25 9.8
U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid tran... 25 9.8
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 25 9.8
AF067942-8|AAG45575.1| 349|Caenorhabditis elegans Serpentine re... 25 9.8
>Z70309-7|CAB54292.1| 209|Caenorhabditis elegans Hypothetical
protein R102.8 protein.
Length = 209
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 18 IYCRI*NTMKLIILLFVVAAFVTLAMG-RKSLRDP 119
+Y + TM+++++LF+ A+VT G K+ DP
Sbjct: 39 LYIHVLLTMRILLILFITVAYVTAFPGFPKTKWDP 73
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 222 NKFYIESICLRVCCKVFESCVSAPRDGQNV 133
N FY++ CC VF++C + G NV
Sbjct: 769 NTFYLDRFVNAYCCDVFDNC-NVATSGFNV 797
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 222 NKFYIESICLRVCCKVFESCVSAPRDGQNV 133
N FY++ CC VF++C + G NV
Sbjct: 769 NTFYLDRFVNAYCCDVFDNC-NVATSGFNV 797
>Z68160-4|CAA92292.1| 583|Caenorhabditis elegans Hypothetical
protein D1046.4 protein.
Length = 583
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -3
Query: 196 SSCLL*GLRILCFSPSGWPKCAVVFNGSLNDFLPIASVTNAATTNSRIISFMVFYIRQ 23
S+ +L ++C S K + +FNGS ND+ + + + R I F I+Q
Sbjct: 49 SNTILINFSVICMSEE---KISTMFNGSHNDYEVLREAIATSMNDFRSIWFTFSSIKQ 103
>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
protein Y51A2D.19c protein.
Length = 1131
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 59 QDNQLHGVLYSTIYGSLF 6
QDN GV+++T YG++F
Sbjct: 1049 QDNPYDGVVHNTTYGAMF 1066
>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
protein Y51A2D.19b protein.
Length = 1118
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 59 QDNQLHGVLYSTIYGSLF 6
QDN GV+++T YG++F
Sbjct: 1036 QDNPYDGVVHNTTYGAMF 1053
>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
protein Y51A2D.19a protein.
Length = 1140
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 59 QDNQLHGVLYSTIYGSLF 6
QDN GV+++T YG++F
Sbjct: 1058 QDNPYDGVVHNTTYGAMF 1075
>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conductance
calcium-activatedpotassium channel SLO-1c protein.
Length = 1131
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 59 QDNQLHGVLYSTIYGSLF 6
QDN GV+++T YG++F
Sbjct: 1049 QDNPYDGVVHNTTYGAMF 1066
>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conductance
calcium-activatedpotassium channel SLO-1b protein.
Length = 1118
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 59 QDNQLHGVLYSTIYGSLF 6
QDN GV+++T YG++F
Sbjct: 1036 QDNPYDGVVHNTTYGAMF 1053
>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conductance
calcium-activatedpotassium channel SLO-1a protein.
Length = 1140
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 59 QDNQLHGVLYSTIYGSLF 6
QDN GV+++T YG++F
Sbjct: 1058 QDNPYDGVVHNTTYGAMF 1075
>U58754-5|AAB00672.2| 330|Caenorhabditis elegans Serpentine
receptor, class sx protein14 protein.
Length = 330
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 36 NTMKLIILLFVVAAFVTLAM 95
NT+K +ILLF++ F+T+ +
Sbjct: 216 NTLKYLILLFLMFRFITITI 235
>Z82272-1|CAB05218.1| 341|Caenorhabditis elegans Hypothetical
protein F55G11.2 protein.
Length = 341
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 71 GRVCHTRYGQKIIERSIKNYGTFWPSRGAETQDSKTLQQ 187
G VC T G+ I + I +WP+ ETQ + L++
Sbjct: 19 GNVCKT--GKAINKPVIDGTPVYWPASWTETQPAPQLEK 55
>AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin
related protein 1 protein.
Length = 109
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 146 SRGAETQDSKTLQQTRRQIDSM*NLFVIN 232
S+G +K LQQT+ Q+D + + +N
Sbjct: 13 SQGGPRPSNKRLQQTQAQVDEVVGIMKVN 41
>AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 146 SRGAETQDSKTLQQTRRQIDSM*NLFVIN 232
S+G +K LQQT+ Q+D + + +N
Sbjct: 13 SQGGPRPSNKRLQQTQAQVDEVVGIMKVN 41
>AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 146 SRGAETQDSKTLQQTRRQIDSM*NLFVIN 232
S+G +K LQQT+ Q+D + + +N
Sbjct: 13 SQGGPRPSNKRLQQTQAQVDEVVGIMKVN 41
>AC006680-6|AAK72300.1| 335|Caenorhabditis elegans Serpentine
receptor, class j protein13 protein.
Length = 335
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 236 YNLLQINFTLNQFVFVFVVRSSNLVFQPLGM 144
Y +L I+F + +++ +F + VFQPLGM
Sbjct: 106 YGILVIHF-IYRYIALFFPQFVKKVFQPLGM 135
>Z81086-7|CAB03118.2| 316|Caenorhabditis elegans Hypothetical
protein F53B6.7 protein.
Length = 316
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 38 HHEADYPAVCRGRVCHTRYGQKIIERSIKNYGTF 139
H++ D P RG++ YG+ ++ I+ + F
Sbjct: 101 HYKFDPPLTERGQIVSETYGRGLLNAGIRPFEVF 134
>Z74043-10|CAA98542.2| 653|Caenorhabditis elegans Hypothetical
protein T19B10.3 protein.
Length = 653
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +2
Query: 86 TRYGQKIIERSIKNYGTFWPSRGAE 160
T +G+ I + +N+G +WP++G +
Sbjct: 581 TGWGKGIAIVNGRNFGRYWPTKGPQ 605
>U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid
transporter protein 8 protein.
Length = 483
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 169 ILCFSPSGWPKCAVVFNGSLNDFLPIASV 83
I+CF+ SG CA +F L FL + ++
Sbjct: 122 IVCFTSSGADNCAKLFGFGLLLFLTLTNM 150
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 189 VCCKVFESCVSAPRD 145
+CC CVSAPRD
Sbjct: 120 ICCMDTIGCVSAPRD 134
>AF067942-8|AAG45575.1| 349|Caenorhabditis elegans Serpentine
receptor, class h protein62 protein.
Length = 349
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 248 FVYRYNLLQINFTLNQFVFVFVVRSSNLVFQPLGMAKMCRSF*WI 114
F +++ IN TL +F RSS++ F ++K WI
Sbjct: 113 FQMYFSITMINATLVSITILFENRSSSISFNKFRISKRKYKILWI 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,399,817
Number of Sequences: 27780
Number of extensions: 121148
Number of successful extensions: 267
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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