Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c12
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    31   0.22 
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    29   0.66 
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    28   1.5  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   2.0  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   2.7  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    27   2.7  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   3.5  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   3.5  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    26   4.7  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    26   4.7  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    26   4.7  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   4.7  
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces...    26   4.7  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   8.1  

>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 321 TDEEDIVRKKPKN--NTIESDDEENETPTNQVLDETLELEPLTGENSHKIDEYYTNNNDV 494
           T E + +R K  N  N I    EENE  T ++   T E + L  E   +I  Y  N +++
Sbjct: 505 TKELETLRMKNSNDLNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSYEVNVSEL 564

Query: 495 NG 500
           NG
Sbjct: 565 NG 566


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 19/63 (30%), Positives = 25/63 (39%)
 Frame = +3

Query: 267  WQKPITRFFASKDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDETLELEPLTG 446
            W    T F    D    S DEED   K+ K+ +   DDEE +           E + L+ 
Sbjct: 1377 WTDGSTVFDKLADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEIPSTAADFERQLLSS 1436

Query: 447  ENS 455
             NS
Sbjct: 1437 PNS 1439


>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +3

Query: 309 DHGSTDEEDIVRKKPKNN-TIESDDEENETPTNQVLDET 422
           D GS D ED +++K +NN ++++D+++  T T    D++
Sbjct: 95  DSGS-DSEDEIKEKAENNASLKNDEDDLNTKTENKTDDS 132


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = +3

Query: 303 DSDHGSTDEEDIVRKKPKNNTIESDDEENET-PTNQVLDETLELEPLTGE-NSHKIDEYY 476
           DS  GS   ++    +  + + E DDE+N T   N+     +  E   GE +SH  +   
Sbjct: 336 DSSAGSEGVDEGTSTEANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSDNVVL 395

Query: 477 TNNNDV---NGDGHEKKTL 524
           ++ N V   N DG +   L
Sbjct: 396 SDGNSVKKMNEDGADTSLL 414


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 208 TVPLVVAPEAIQSVQ-GKLQSGRNPSPDSSPPR 303
           +VPL  AP + QS++ G L   R+PSP S  PR
Sbjct: 327 SVPLP-APTSSQSLRLGSLHRSRSPSPRSGRPR 358


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 154 HDAMWHHHRVHPALQVPVTVPLVVAPEAIQSVQGKLQS 267
           H   W H  +HPA+ + +   ++  P+  QS +   QS
Sbjct: 723 HVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQS 760


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/83 (25%), Positives = 33/83 (39%)
 Frame = +3

Query: 240 PVCPRETPKWQKPITRFFASKDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDE 419
           PV  R+  K+ K   R             E  +  KK K+N   +     +TP  ++ DE
Sbjct: 483 PVQRRKDGKFAKSTKRKKQKSLKPDTENQESSVKNKKAKSNV--NLQYSPKTPICKINDE 540

Query: 420 TLELEPLTGENSHKIDEYYTNNN 488
           TL+   +     HK   + T+ N
Sbjct: 541 TLKPPTIANIAGHKQMNHLTSEN 563


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 390 ETPTNQVLDETLELEPLTGENSHKIDEYYTNNN 488
           E+ TN+       LEP  G N HK D    N N
Sbjct: 632 ESSTNEATSVGPALEPSQGANVHKSDSELDNQN 664


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = +3

Query: 297 SKDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDETLELEPLTGENSHKIDEYY 476
           S+ S+  S  EE  V    K     S+D E+++ +++  +ET E E    E+S   DE  
Sbjct: 53  SESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEET-ESE----EDSEVSDESE 107

Query: 477 TNNNDVNGDGHEKKTLEE 530
           + +   +    E ++ EE
Sbjct: 108 SESESESESEEESESEEE 125



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 294 ASKDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDETLELEPLTGEN 452
           AS+DS+  S   E+    + + ++  SD+ E+E+ +    +E  E E  + E+
Sbjct: 77  ASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDES 129



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 300 KDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQV 410
           K  D  S++EE    +   ++  ES +EE+E+  ++V
Sbjct: 31  KKQDDSSSEEESSEEESASSSESESSEEESESEESEV 67


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 294 ASKDSDHGSTDEEDIVRKKPKNNTIESDDEENET---PTNQVLDETL-ELEP 437
           ++ +S+   TD+        KN+T + D E N T    T  ++D  L E EP
Sbjct: 689 STSESEDEETDDTSQEEDNEKNSTPDEDTENNNTSSISTKSIMDRPLTEPEP 740


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 339 VRKKPKNNTIESDDEENETPTNQVLDETLELEPLTGENSHKID--EYYTNNNDVNGD 503
           VR  P + T  +DDE      +  +D+T+  +  TG  S+++    Y T+  D + D
Sbjct: 543 VRVDPASGTAPTDDEPYTDRDSSFVDDTINTK-ATGNTSNRLSLPAYPTDGGDTSID 598


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 369  ESDDEENETPTNQVLDETLELEPLTGENSHKIDEYYTNNNDVNGDGHE 512
            E D  E ++ TN + ++  ELE    E    IDEY  +  +  G   E
Sbjct: 1240 ERDSTEEQSNTNDMDEDRSELEEDLDETVGHIDEYMISFLEQEGTSDE 1287


>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +3

Query: 327 EEDIVRKKPKNNTIESDDEENETPTNQVLDETLELEPLTGENSHKIDEYYTNNNDV 494
           EE  +RK+ + N   SDD+E E      L   LEL+ L  E SH + E  +    V
Sbjct: 112 EEQKLRKRSRQNDDGSDDDEVEN-----LKNDLELQKLLRE-SHLLHEATSRTGQV 161


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 303 DSDHGSTDEEDIVRKKPKNNTIESDDEENETP--TNQVLDETLELEPL 440
           D+    TDE D ++K  KN     DDE   +    +Q+ D+ L +E L
Sbjct: 487 DTVFSLTDERDGLQKDLKNTKGNLDDEIGRSAFLKSQIRDQELTIEKL 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,448
Number of Sequences: 5004
Number of extensions: 50194
Number of successful extensions: 234
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)