Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17c12
(714 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 29 0.058
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 24 1.2
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 23 2.2
M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 23 2.9
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.8
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 23 3.8
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 5.0
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 22 6.6
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 6.6
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 8.8
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 28.7 bits (61), Expect = 0.058
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 300 KDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDETL-ELEPLTGENSHKI---- 464
+D+D+G+ D + RKK ++D+EE + P Q + L E EN +I
Sbjct: 117 EDNDYGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDEKSLFENGVEIGINF 176
Query: 465 DEYYTNNNDVNGD 503
D+Y +V+GD
Sbjct: 177 DKYDNIQVNVSGD 189
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 303 DSDHGSTDEEDIVRKKPKNNTIESDDE 383
D D +D E+I +K N+ SDDE
Sbjct: 87 DKDDDESDNENIKSQKEFPNSSSSDDE 113
Score = 21.8 bits (44), Expect = 6.6
Identities = 12/52 (23%), Positives = 23/52 (44%)
Frame = +3
Query: 348 KPKNNTIESDDEENETPTNQVLDETLELEPLTGENSHKIDEYYTNNNDVNGD 503
KPK T + DD+E++ + E E + I + + + + +GD
Sbjct: 80 KPKEETDDKDDDESDNENIKSQKEFPNSSSSDDERPNSIHQRASFSLNTDGD 131
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 23.4 bits (48), Expect = 2.2
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 372 SDDEENETPTNQVLDETLELEPLTGENSHKIDEYYTNN--NDVNGDG 506
S + N TN+ D + ++P+ + + I + Y NN + NG G
Sbjct: 133 SINNTNNNNTNKYKDYYIWVDPVKDDKGNPIKDKYPNNWLSVFNGTG 179
>M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E30. ).
Length = 109
Score = 23.0 bits (47), Expect = 2.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 265 SGRNPSPDSSPPRTLIMALQTKKI 336
+G+N SP+ PRT A Q ++
Sbjct: 12 NGKNGSPEEKRPRTAFSAEQLARL 35
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.8
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 414 PRLG-LLVFHSLHRPILWCCFLVFFSLYLLRL*SHDQSPWRRRIW 283
P LG L+F + I C +V +++ +H +PW +R++
Sbjct: 305 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVF 349
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.8
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 414 PRLG-LLVFHSLHRPILWCCFLVFFSLYLLRL*SHDQSPWRRRIW 283
P LG L+F + I C +V +++ +H +PW +R++
Sbjct: 305 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVF 349
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 345 KKPKNNTIESDDEENETPTNQVL 413
++P N S+++E+ETP + V+
Sbjct: 425 EEPTNTASGSNEDEDETPLDPVV 447
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 22.2 bits (45), Expect = 5.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -2
Query: 401 CWCFILFIVRFYGVVFWFF 345
CW + +IV +F+FF
Sbjct: 71 CWMNVYYIVILAWAIFYFF 89
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 360 CFLVFFSLYLLR 325
C+L FF++YL+R
Sbjct: 21 CWLPFFTMYLVR 32
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 360 CFLVFFSLYLLR 325
C+L FF++YL+R
Sbjct: 469 CWLPFFTMYLVR 480
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.4 bits (43), Expect = 8.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 300 KDSDHGSTDEEDIVRKKPKNNTIESDDEEN 389
+D DH STD ++ K K T+ + D +
Sbjct: 314 RDPDHHSTDIQNCDSVKIKFETLHTMDSSD 343
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,981
Number of Sequences: 438
Number of extensions: 3507
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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