Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17c10
(243 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0746 - 31636024-31641396 31 0.17
07_01_0161 + 1132505-1132704,1132839-1134075 30 0.23
11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227 27 1.6
07_01_1019 + 8714171-8714190,8714239-8714371,8714781-8714945,871... 26 3.7
08_02_0478 + 17621678-17623768 26 4.9
01_06_0359 + 28722524-28722613,28722794-28722863,28723062-287231... 26 4.9
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 25 6.4
06_02_0006 + 10528423-10528768,10529132-10529201,10530820-105308... 25 6.4
04_03_0860 + 20377577-20377948,20378440-20378505,20379411-203794... 25 6.4
03_05_0875 - 28434894-28435082,28435173-28435247,28435399-284354... 25 6.4
07_03_0695 + 20753281-20753802 25 8.5
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 30.7 bits (66), Expect = 0.17
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 71 AFVTLAMGRKSLRDPLKTTAHFGHPE 148
+FVTL G++ L +PLK H+GHP+
Sbjct: 1240 SFVTL--GQRVLANPLKVRMHYGHPD 1263
>07_01_0161 + 1132505-1132704,1132839-1134075
Length = 478
Score = 30.3 bits (65), Expect = 0.23
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 34 HHEADYPAVCRGRVCHTRYGQKIIERSIKNYGTFWPSRGAETXDSKT 174
HH A C+G H RY + +I+ ++ Y + W + + S +
Sbjct: 366 HHARPNSACCQGHNHHGRYPEPVIKLVVRRYISAWQKPSSSSSSSSS 412
>11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227
Length = 492
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 227 FITNKFYIESIXLRVCCKV 171
FI+N F +ES+ + CCK+
Sbjct: 180 FISNSFNLESLEISSCCKI 198
>07_01_1019 +
8714171-8714190,8714239-8714371,8714781-8714945,
8715810-8715890,8716223-8716318
Length = 164
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 77 QTRPRQTAG*SASWCSIFDNIWVAF 3
Q R R TA + SWCS+ W+ +
Sbjct: 129 QMRNRLTAMNTRSWCSVLAGYWIDY 153
>08_02_0478 + 17621678-17623768
Length = 696
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 88 SECDKRGHDKQQDNQLHG-VLYSTIYG 11
S C + GHD Q +HG V+ S + G
Sbjct: 304 SSCSEHGHDDHQGRVIHGLVIKSALEG 330
>01_06_0359 +
28722524-28722613,28722794-28722863,28723062-28723159,
28724029-28724167,28724243-28724370,28724500-28724592,
28724707-28724757,28725405-28725470,28725568-28725633,
28725900-28725977,28726248-28726427,28726502-28726577,
28726660-28726823,28727569-28727931
Length = 553
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 156 FSPSGWPKCAVVFNGSLNDFLPIASVTNAATTNSRIISFMVFYIRQYMGRFF 1
F P+GW + A+V S N TN+ +S ++ F+ +R +MG F
Sbjct: 395 FDPTGW-ELALVTTPSTN--------TNSMAMDSNLVGFLTLSLRIFMGGGF 437
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 41 KLIILLFVVAAFVTLAMGRKSLRDPL 118
+L+I+LF++A + A+ R + +PL
Sbjct: 187 RLVIILFLLAVVASAAVARSNYEEPL 212
>06_02_0006 +
10528423-10528768,10529132-10529201,10530820-10530892,
10530973-10531053,10532124-10532239,10532339-10532630
Length = 325
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 97 KIIERSIKNYGTFWPSRGAETXDSKTLQQTR 189
K + S + WP RGAE D L++T+
Sbjct: 157 KCEQTSTTGHSLAWPDRGAEKDDCLELRKTQ 187
>04_03_0860 +
20377577-20377948,20378440-20378505,20379411-20379492,
20380142-20380362
Length = 246
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 10 THILSNIEHHEADYPAVCRGRVCHTRYGQKIIERSI 117
T+IL E D P CR C T G K++E +
Sbjct: 78 TYILDAAEEAGVDLPYSCRAGACSTCAG-KVVEGGV 112
>03_05_0875 -
28434894-28435082,28435173-28435247,28435399-28435490,
28435721-28435835,28436019-28436188,28436237-28436310,
28436397-28436553,28436658-28436730,28436898-28436960,
28437067-28437341,28437710-28437816,28437884-28438788,
28439742-28440032
Length = 861
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 101 SLRDPLKTTAHFGHPEGLKXXIXRPYNKH 187
+LR+ +K FGH GLK R Y KH
Sbjct: 656 NLREVIKK---FGHGTGLKLTAVRAYTKH 681
>07_03_0695 + 20753281-20753802
Length = 173
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 64 DKQQDNQLHGVLYSTIYGSLF 2
D++ NQ G+ Y TI+GS++
Sbjct: 49 DERNPNQKIGIHYGTIFGSVY 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,862,933
Number of Sequences: 37544
Number of extensions: 90634
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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