Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17c10
(243 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70309-7|CAB54292.1| 209|Caenorhabditis elegans Hypothetical pr... 26 3.1
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical... 26 4.1
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical... 26 4.1
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical... 26 4.1
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct... 26 4.1
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct... 26 4.1
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct... 26 4.1
U58754-5|AAB00672.2| 330|Caenorhabditis elegans Serpentine rece... 25 5.4
Z81125-2|CAD56600.1| 507|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z81125-1|CAB03382.1| 501|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z81086-7|CAB03118.2| 316|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z74043-10|CAA98542.2| 653|Caenorhabditis elegans Hypothetical p... 25 9.4
>Z70309-7|CAB54292.1| 209|Caenorhabditis elegans Hypothetical
protein R102.8 protein.
Length = 209
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 14 IYCRI*NTMKLIILLFVVAAFVTLAMG-RKSLRDP 115
+Y + TM+++++LF+ A+VT G K+ DP
Sbjct: 39 LYIHVLLTMRILLILFITVAYVTAFPGFPKTKWDP 73
>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
protein Y51A2D.19c protein.
Length = 1131
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 55 QDNQLHGVLYSTIYGSLF 2
QDN GV+++T YG++F
Sbjct: 1049 QDNPYDGVVHNTTYGAMF 1066
>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
protein Y51A2D.19b protein.
Length = 1118
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 55 QDNQLHGVLYSTIYGSLF 2
QDN GV+++T YG++F
Sbjct: 1036 QDNPYDGVVHNTTYGAMF 1053
>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
protein Y51A2D.19a protein.
Length = 1140
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 55 QDNQLHGVLYSTIYGSLF 2
QDN GV+++T YG++F
Sbjct: 1058 QDNPYDGVVHNTTYGAMF 1075
>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conductance
calcium-activatedpotassium channel SLO-1c protein.
Length = 1131
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 55 QDNQLHGVLYSTIYGSLF 2
QDN GV+++T YG++F
Sbjct: 1049 QDNPYDGVVHNTTYGAMF 1066
>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conductance
calcium-activatedpotassium channel SLO-1b protein.
Length = 1118
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 55 QDNQLHGVLYSTIYGSLF 2
QDN GV+++T YG++F
Sbjct: 1036 QDNPYDGVVHNTTYGAMF 1053
>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conductance
calcium-activatedpotassium channel SLO-1a protein.
Length = 1140
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 55 QDNQLHGVLYSTIYGSLF 2
QDN GV+++T YG++F
Sbjct: 1058 QDNPYDGVVHNTTYGAMF 1075
>U58754-5|AAB00672.2| 330|Caenorhabditis elegans Serpentine
receptor, class sx protein14 protein.
Length = 330
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 32 NTMKLIILLFVVAAFVTLAM 91
NT+K +ILLF++ F+T+ +
Sbjct: 216 NTLKYLILLFLMFRFITITI 235
>Z81125-2|CAD56600.1| 507|Caenorhabditis elegans Hypothetical
protein T22A3.4b protein.
Length = 507
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -1
Query: 171 LXIXXFSPSGWPKCAVVFNGSLNDFLPIASVTNAATTNSRIISFMVFYIRQYMGR 7
L + ++ S P C++VF+G P+ +A T IS++ +Y+ R
Sbjct: 202 LGVSKYNHSCRPTCSMVFDGYRVCLRPLVPGVDAENTEEAFISYIDVGRSKYIRR 256
>Z81125-1|CAB03382.1| 501|Caenorhabditis elegans Hypothetical
protein T22A3.4a protein.
Length = 501
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -1
Query: 171 LXIXXFSPSGWPKCAVVFNGSLNDFLPIASVTNAATTNSRIISFMVFYIRQYMGR 7
L + ++ S P C++VF+G P+ +A T IS++ +Y+ R
Sbjct: 202 LGVSKYNHSCRPTCSMVFDGYRVCLRPLVPGVDAENTEEAFISYIDVGRSKYIRR 256
>Z81086-7|CAB03118.2| 316|Caenorhabditis elegans Hypothetical
protein F53B6.7 protein.
Length = 316
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 34 HHEADYPAVCRGRVCHTRYGQKIIERSIKNYGTF 135
H++ D P RG++ YG+ ++ I+ + F
Sbjct: 101 HYKFDPPLTERGQIVSETYGRGLLNAGIRPFEVF 134
>Z74043-10|CAA98542.2| 653|Caenorhabditis elegans Hypothetical
protein T19B10.3 protein.
Length = 653
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +1
Query: 82 TRYGQKIIERSIKNYGTFWPSRGAE 156
T +G+ I + +N+G +WP++G +
Sbjct: 581 TGWGKGIAIVNGRNFGRYWPTKGPQ 605
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,203,639
Number of Sequences: 27780
Number of extensions: 82851
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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