Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c09
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   237   1e-63
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   235   3e-63
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    29   0.64 
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    29   0.84 
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    28   1.5  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   3.4  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   5.9  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   7.8  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   7.8  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   7.8  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  237 bits (580), Expect = 1e-63
 Identities = 116/220 (52%), Positives = 159/220 (72%)
 Frame = +2

Query: 35  GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 214
           GK K   +  KK +++R  VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ L
Sbjct: 4   GKNKRLSKG-KKGIKKRV-VDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSL 61

Query: 215 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 394
           KGR+ EVSLADLQ D   E SFRK +L  E +QG++ L +F+G D+T+DKLR +V+KWQ+
Sbjct: 62  KGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQS 119

Query: 395 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 574
            IEAN  +KTTDGY+ R+F IGFT++     +KT YAQ +Q+RAI +KM ++I       
Sbjct: 120 TIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGC 179

Query: 575 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 694
            ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK
Sbjct: 180 SMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILK 219


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  235 bits (576), Expect = 3e-63
 Identities = 114/220 (51%), Positives = 162/220 (73%)
 Frame = +2

Query: 35  GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 214
           GK K   +  KK +++R  VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ L
Sbjct: 4   GKNKRLSKG-KKGIKKRV-VDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSL 61

Query: 215 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 394
           KGR+ EVSLADLQ D   E +FRK +L  E +QG++ L +F+G+ +T+DKLR +V+KWQT
Sbjct: 62  KGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQT 119

Query: 395 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 574
            IEA+  +KTTDGY+ RVF IGFT + +   +KT YAQ +Q+RAIR+KM ++I    ++ 
Sbjct: 120 TIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSC 179

Query: 575 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 694
            +RE+V KLIP+ I ++IE+A   I+PL++V +RKVK+LK
Sbjct: 180 SMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILK 219


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +2

Query: 167 TLVNRTQG-TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHG 343
           T VN+    TK+A    KG   +V++  L+   DAE + + F  I EY++  N       
Sbjct: 82  TSVNKANMLTKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFP 137

Query: 344 MDLTTDKLRWMVKKWQTLIE-ANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 493
            D T  K    + +W ++ E    +    D  +    C+   ++  L+  K
Sbjct: 138 KDKTQGK---FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 224 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 397
           VF+V   + + D    R+  +   +A   Q R V C  H MDL  + LR +V  ++   L
Sbjct: 86  VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143

Query: 398 IEANIDVKTT 427
           +E + D++TT
Sbjct: 144 LETSKDLETT 153


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 545 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 676
           E +  D     +R++ ++ +   +A ++   C GI  +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 391 LPFFNHPPELIGCEVHAVEVAEHITS 314
           L    H PEL+ C     +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 451  LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 543
            LHW+    L+  +Q +  P H+GQ  S  + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +2

Query: 368 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 505
           ++    W  L+       T  GYV+R    GFT+  ++ + K  +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +2

Query: 458 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 586
           G T +DS+ ++    A H + R +++K  E ++ D +N  +++
Sbjct: 7   GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 347 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 445
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,599
Number of Sequences: 5004
Number of extensions: 62366
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)