Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c09
         (696 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   331   1e-92
EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.           28   0.32 
AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.        27   0.75 
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   5.3  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  331 bits (814), Expect = 1e-92
 Identities = 159/220 (72%), Positives = 185/220 (84%)
 Frame = +2

Query: 35  GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 214
           GK K   +  KK  +++  VDPFTRKDWYDVKAP+MF  RQ G TLVNRTQGTKIAS+GL
Sbjct: 4   GKNKGVSKGGKKGSKKKV-VDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGL 62

Query: 215 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 394
           KGRVFEVSLADLQ + DAERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MV KWQT
Sbjct: 63  KGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQT 122

Query: 395 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 574
           LIE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCYAQH+Q++ IR KM  II R++T++
Sbjct: 123 LIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITST 182

Query: 575 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 694
           +L+ VV KL+PDSIAKDIEKAC  +YPL DV IRKVKVLK
Sbjct: 183 DLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLK 222


>EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 0.32
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +2

Query: 233 VSLADLQADTDA-ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 394
           V+LA+L A +D  E    ++  I + +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 181 VNLAELAASSDTLEHLNLQYNFIYD-IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 234


>AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.
          Length = 286

 Score = 26.6 bits (56), Expect = 0.75
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +2

Query: 233 VSLADLQADTDA-ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 394
           V+LA+L A +D  E    ++  + + +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 106 VNLAELAASSDTLEHLNLQYNFMYD-IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 159


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 679 LSDANIAQRVDAMAGLLDVLGNGVRNQLV 593
           L+ AN  QR++    L D++G+  RN+++
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVL 588


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 765,119
Number of Sequences: 2352
Number of extensions: 16874
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)