Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17c09
(696 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 321 5e-88
AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 321 5e-88
Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 305 3e-83
AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p pro... 268 4e-72
AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 248 4e-66
AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 175 6e-44
AE013599-2921|AAF57537.1| 632|Drosophila melanogaster CG15904-P... 29 8.0
>AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal
protein S3a protein.
Length = 268
Score = 321 bits (789), Expect = 5e-88
Identities = 157/220 (71%), Positives = 180/220 (81%)
Frame = +2
Query: 35 GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 214
GK K + KK +++ VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ L
Sbjct: 4 GKNKGLSKGGKKGGKKKV-VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYL 62
Query: 215 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 394
KGRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQT
Sbjct: 63 KGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQT 122
Query: 395 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 574
LIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ +
Sbjct: 123 LIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGA 182
Query: 575 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 694
+L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK
Sbjct: 183 DLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLK 222
>AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA,
isoform A protein.
Length = 268
Score = 321 bits (789), Expect = 5e-88
Identities = 157/220 (71%), Positives = 180/220 (81%)
Frame = +2
Query: 35 GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 214
GK K + KK +++ VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ L
Sbjct: 4 GKNKGLSKGGKKGGKKKV-VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYL 62
Query: 215 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 394
KGRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQT
Sbjct: 63 KGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQT 122
Query: 395 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 574
LIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ +
Sbjct: 123 LIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGA 182
Query: 575 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 694
+L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK
Sbjct: 183 DLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLK 222
>Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein
S3a protein.
Length = 270
Score = 305 bits (750), Expect = 3e-83
Identities = 153/222 (68%), Positives = 176/222 (79%), Gaps = 2/222 (0%)
Frame = +2
Query: 35 GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 214
GK K + KK +++ VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+
Sbjct: 4 GKNKGLSKGGKKGGKKKV-VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYF 62
Query: 215 KGRVFEVSLA-DLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 391
KGRVFEVSL DLQ D D E SFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQ
Sbjct: 63 KGRVFEVSLVPDLQKDIDPEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQ 122
Query: 392 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRK-KMCEIITRDVT 568
TLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYA +QVR IR +M +IIT +V+
Sbjct: 123 TLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTDIITNEVS 182
Query: 569 NSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 694
++L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK
Sbjct: 183 GADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLK 224
>AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p
protein.
Length = 217
Score = 268 bits (658), Expect = 4e-72
Identities = 129/186 (69%), Positives = 152/186 (81%)
Frame = +2
Query: 35 GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 214
GK K + KK +++ VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ L
Sbjct: 4 GKNKGLSKGGKKGGKKKV-VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYL 62
Query: 215 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 394
KGRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQT
Sbjct: 63 KGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQT 122
Query: 395 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 574
LIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ +
Sbjct: 123 LIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGA 182
Query: 575 ELREVV 592
+L++++
Sbjct: 183 DLKQLL 188
>AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB,
isoform B protein.
Length = 218
Score = 248 bits (608), Expect = 4e-66
Identities = 120/159 (75%), Positives = 134/159 (84%)
Frame = +2
Query: 218 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 397
GRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14 GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73
Query: 398 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 577
IEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ ++
Sbjct: 74 IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133
Query: 578 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 694
L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK
Sbjct: 134 LKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLK 172
>AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD,
isoform D protein.
Length = 163
Score = 175 bits (425), Expect = 6e-44
Identities = 83/117 (70%), Positives = 97/117 (82%)
Frame = +2
Query: 344 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 523
MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR
Sbjct: 1 MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60
Query: 524 AIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 694
IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK
Sbjct: 61 KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLK 117
>AE013599-2921|AAF57537.1| 632|Drosophila melanogaster CG15904-PA
protein.
Length = 632
Score = 28.7 bits (61), Expect = 8.0
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 676 SDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDC 524
+ AN+ M LLD++ GV L+H E V + ++DC
Sbjct: 264 TSANVTADYLNMTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,688,196
Number of Sequences: 53049
Number of extensions: 718352
Number of successful extensions: 2168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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