Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c07
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...   316   1e-88
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.2  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   1.2  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   2.9  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   3.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.8  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score =  316 bits (776), Expect = 1e-88
 Identities = 154/177 (87%), Positives = 164/177 (92%)
 Frame = +1

Query: 121 MAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTET 300
           MAASDS  D+SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERT+SELIPFLTET
Sbjct: 1   MAASDSAGDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTRSELIPFLTET 60

Query: 301 IYDEDEVLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEH 480
           IYDEDEVLLALAEQLGSFI LVGG E+A+CLLPPLE+LA VEETVVRDKAV SLRAVA+ 
Sbjct: 61  IYDEDEVLLALAEQLGSFITLVGGPEYAYCLLPPLESLATVEETVVRDKAVESLRAVAQQ 120

Query: 481 HSPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRSLCQ 651
           HSP  LE HFVPLVQRL+ GDWFTSRTSACGLFSVCYPRVSA +KA+LR HFR+LCQ
Sbjct: 121 HSPADLENHFVPLVQRLSAGDWFTSRTSACGLFSVCYPRVSAQMKADLRSHFRALCQ 177



 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
 Frame = +1

Query: 142 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-E 318
           T E L P+   + +LK+E  ++RLN I  L  +   +G+++    L+P + E   D    
Sbjct: 363 TIEHLLPL--FLTQLKDECPEVRLNIISNLDCVNEVIGIQQLSQSLLPAIVELAEDSKWR 420

Query: 319 VLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQAL 498
           V  A+ E +      +G   F   L     T        +R+ A  +LR + +    +  
Sbjct: 421 VRSAIIEYMPLLAGQLGREFFDEKLNALCMTWLMDHVFAIREAATLNLRKLVDQFGAEWA 480

Query: 499 EEHFVPLV 522
           E   +P V
Sbjct: 481 ETTIIPKV 488



 Score = 27.5 bits (58), Expect = 0.10
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
 Frame = +1

Query: 184 LKNEDVQLRLNSIKKLSTIALALGVERTKS----ELIPFLTETIYDEDE-VLLALAEQLG 348
           LK+ + ++R  +  K+      L     +S     ++P + E + D ++ V  ALA  + 
Sbjct: 293 LKDTEAEVRAAAANKVKDFCQNLDKAHQESIIMNNILPCVKELVADPNQHVKSALASVIM 352

Query: 349 SFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQR 528
               ++G       LLP   T    E   VR   +++L  V E    Q L +  +P +  
Sbjct: 353 GLSPILGRHNTIEHLLPLFLTQLKDECPEVRLNIISNLDCVNEVIGIQQLSQSLLPAIVE 412

Query: 529 LA 534
           LA
Sbjct: 413 LA 414


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -1

Query: 474  GNGTE*SHCLISDYCLFNCC*CLQGW--KKTMCELSSADQVDETTKL 340
            G+ T   HCL   Y +FNC   L  W   K +C+       D T+ +
Sbjct: 1289 GDCTRYLHCLWGKYEVFNCAPGLH-WDNNKNICDWPEKATCDGTSNV 1334


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 417 C*CLQGWKKTMCELSSAD 364
           C C +GW+  +C +++ D
Sbjct: 92  CICKEGWEGALCNINTDD 109



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 417 C*CLQGWKKTMCELSSADQVDETT 346
           C C  GWK   C L  +   D TT
Sbjct: 130 CNCKNGWKGKTCSLKDS-HCDHTT 152



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 94 FNSKYTHSNFND 59
          F  KY H N ND
Sbjct: 60 FTGKYCHENIND 71


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = -2

Query: 545 QSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVS 405
           Q  P    T  T  S  AC L+CS  A           V +T   V+
Sbjct: 35  QKAPITPDTEATGLSLPACRLFCSEAAALWPKPTGEVHVGTTLVKVN 81


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 97  QDKAQ*IKMAASDSGTDESLY 159
           Q  ++ IKM  ++SG D S+Y
Sbjct: 264 QSLSRWIKMVLAESGVDTSIY 284


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 295 ETIYDEDEVLLALAE 339
           E IY ED+VLL  +E
Sbjct: 17  EMIYREDDVLLVKSE 31


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 485 LWCSATARSEATALSRTTVSSTAANVSRGGRRQCAN-SPPP 366
           ++ + TA  + +  +RTT+ +  A+     R + A+ SPPP
Sbjct: 242 IYPAVTATVQLSTCTRTTLKNNRASPYPMQRPKSASLSPPP 282


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,177
Number of Sequences: 336
Number of extensions: 2660
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)