Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17c07
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 205 5e-54
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.3
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 28 1.3
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 1.8
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 27 2.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 3.1
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 3.1
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 4.1
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|... 26 5.4
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 5.4
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 26 5.4
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 7.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 7.2
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.2
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 9.5
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 25 9.5
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 205 bits (500), Expect = 5e-54
Identities = 104/166 (62%), Positives = 127/166 (76%), Gaps = 1/166 (0%)
Frame = +1
Query: 154 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLAL 333
LYPIAVLIDELK++++ RLN++++LSTIALALG ERT+ ELIPFL E+I DEDEVL AL
Sbjct: 10 LYPIAVLIDELKHDEITYRLNALERLSTIALALGPERTRDELIPFLDESIDDEDEVLSAL 69
Query: 334 AEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFV 513
A+QLG+F++ VGG E+AH LL PLE LAA EETVVRDKAV SL V S + LE++FV
Sbjct: 70 ADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQYFV 129
Query: 514 PLVQRLAGGDWFTSRTSACGLFSVCYPRVSAP-VKAELRQHFRSLC 648
PLVQRL+ +WFTSR S+ GL+ Y + P VK LRQ F LC
Sbjct: 130 PLVQRLSTAEWFTSRASSAGLYCAAYSQSENPAVKVSLRQSFSHLC 175
Score = 40.7 bits (91), Expect = 2e-04
Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 3/155 (1%)
Frame = +1
Query: 157 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLLAL 333
Y + + ++ LK+E+ ++RLN I KL + +G+E L+P + D+ V LA+
Sbjct: 362 YLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVRLAI 421
Query: 334 AEQLGSFINLVGGGEFAHCLLPPLETLAAVEETV--VRDKAVASLRAVAEHHSPQALEEH 507
+ + + G EF + + L ++ +E+ V +R+ A+ +LR + E + E
Sbjct: 422 IDYIPLLAQQL-GVEFFNEKMGNL-CMSWLEDHVYSIREAAIKNLRKLTEIFGLEWATET 479
Query: 508 FVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPV 612
+P + + R + S P ++A V
Sbjct: 480 IIPKFLAMRSHPNYLYRMTTIFAISEIAPALNAEV 514
Score = 39.1 bits (87), Expect = 5e-04
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +1
Query: 154 LYPIAVLIDELKNEDVQ-LRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLL 327
L I +I EL N+ Q +R + +A LG E+T L+P E + DE+ EV L
Sbjct: 321 LEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRL 380
Query: 328 ALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVR 441
+ +L +VG + LLP + TLA ++ VR
Sbjct: 381 NIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVR 418
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 115 IKMAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVER 264
+ + SD TDES++P+ + +++++D + +S L + A+A G +
Sbjct: 56 VNYSMSDE-TDESMFPLDSELTDMEDDDTEYISDSTTDLPSAAMARGTRQ 104
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 217 SIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGSFINLV 366
SIKK T + G+E +S ++ F + DE L+ Q+ S +NL+
Sbjct: 138 SIKKEGTQVIVFGIETVRSMVLSFPLIILSTLDENFLSEVAQVFSSLNLL 187
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 181 ELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGS 351
EL+NE +Q LNS K L T L E ++L+ FL T + E + +L QL +
Sbjct: 295 ELENEKIQTELNSWKSLITNELPT-PEAVSNKLV-FLQNTNANLGERVSSLESQLSN 349
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 183 LIYENGNRIQ*FIRPGVARCHFYLLSFVLISIQSIRTQILTITFLCKIYQNEFFVK 16
LI++ N + +RPG L + + QS R + I+ +CK YQ + ++
Sbjct: 197 LIWKLANELVDPVRPGDFNQALMELGAITCTPQSPRCSVCPISEICKAYQEQNVIR 252
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = -2
Query: 578 NSPQADVLEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVSRG 399
+SP + SP + +S + SSS+ S+++ S +++ S ++ SS++++ S
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSS 199
Query: 398 GRRQCANSPPPT 363
++S P T
Sbjct: 200 SSSSSSSSVPIT 211
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 391 LLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFVPLV 522
LLP + A ++ VRD A+A+ +A+ +P A++ VP V
Sbjct: 96 LLPAVIAKVADKQNAVRDAAIAASKAIVRCTTPYAVKA-IVPSV 138
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.2 bits (55), Expect = 4.1
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 211 LNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGS-FINLVGGGEFAH 387
+NS KK + + V T E IPF + D+ A+ L F NLV GE A+
Sbjct: 595 VNSQKKTAPEVSPISV--TLIEQIPFFLQKRDISDDSKDAVLSWLSDLFSNLVCTGEDAN 652
Query: 388 CLLPPLETL 414
CL LE +
Sbjct: 653 CLFHLLENV 661
>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -1
Query: 261 LHAQSQRDRRQLLYR---VQTKLYILILQLIYENGNRIQ*FIRPG 136
LH Q R L Y+ + T+LY +L+ Y +GN I + +PG
Sbjct: 52 LHHQRSRYIYDLYYKREAISTELYNWLLKQNYADGNLIAKWKKPG 96
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 238 IALALGVERTKSELIPFLTETIYDEDEVL 324
+ L +E+ K E++PFL Y +EVL
Sbjct: 473 LVLKSSIEKEKVEIVPFLDIRKYSPNEVL 501
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 460 LRAVAEHHSPQALEEHFVPLVQRLAGGDWF 549
L AV HH A H+ VQ+L WF
Sbjct: 438 LNAVVYHHGTSASGGHYTVDVQQLDKSGWF 467
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 468 RCRAPQPASTRGTLCATSTAPCWRRLVHFKNIC 566
R A P T T C T T P WRR + +C
Sbjct: 625 RANATNPTPTC-TNCQTRTTPLWRRSPDGQPLC 656
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -2
Query: 542 SPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQCANSPPPT 363
S P + S + SS+ L S+T+ S ++ TT+ ST + ++ + +SP T
Sbjct: 262 SVPTQTIDSSSFTSSTPVSLTSSSTS-SSGSSQDSTTIDSTPSTIATSTLQPTTSSPITT 320
Query: 362 KLMKL 348
L
Sbjct: 321 SAPSL 325
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 282 DQLRFSPLHAQSQRDRRQLLYRVQTKLYI 196
D +F+P S R+ LLYR++ KL +
Sbjct: 153 DNEKFNPEVISSLASRQDLLYRIRDKLLV 181
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 285 RDQLRFSPLHAQSQRDRRQLLYRVQ 211
RD+L F +A+ +RD R L R+Q
Sbjct: 578 RDELNFDQPNAEQERDIRDLQERLQ 602
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 169 VLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSE 276
VL+ + KN +KK S + A G+E+TK+E
Sbjct: 105 VLLVKQKNTGRLFAQKQLKKASIVLRAKGLEQTKNE 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,625
Number of Sequences: 5004
Number of extensions: 43632
Number of successful extensions: 156
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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