BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17c07
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 218 3e-57
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 31 1.1
02_03_0007 - 13875735-13875826,13876217-13877465 31 1.1
01_06_1591 - 38484790-38485467,38486165-38486292,38487098-38487356 31 1.1
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 30 1.8
02_02_0737 - 13529180-13529543,13530661-13531178 29 2.4
04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150... 29 3.2
01_01_0051 + 389051-389623 29 3.2
07_03_0025 + 12587868-12588429,12591820-12592031,12592212-125926... 28 5.6
05_06_0070 + 25342965-25343882,25343968-25344618 28 5.6
04_04_1476 - 33863067-33863148,33863239-33863310,33863393-338634... 28 5.6
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 28 5.6
02_05_1287 - 35459419-35459955,35460043-35460966,35461881-354622... 28 5.6
10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376 28 7.4
02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814 28 7.4
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 28 7.4
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 9.8
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 27 9.8
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 9.8
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 27 9.8
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 218 bits (533), Expect = 3e-57
Identities = 108/169 (63%), Positives = 127/169 (75%)
Frame = +1
Query: 145 DESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVL 324
DE LYPIA+LIDELKNED+QLRLNSI++LSTIA ALG ERT+ ELIPFL+E DEDEVL
Sbjct: 5 DEPLYPIAILIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDEDEVL 64
Query: 325 LALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEE 504
LA+AE+LG FI VGG E AH LLPPLETL VEET VRDKAV SL + + +
Sbjct: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGAQMKESDIVD 124
Query: 505 HFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRSLCQ 651
FVP+V+RLA G+WFT+R S+CGLF + YP +KAELR + LCQ
Sbjct: 125 WFVPVVKRLAAGEWFTARVSSCGLFHIAYPSAPDQLKAELRTIYGQLCQ 173
Score = 52.0 bits (119), Expect = 4e-07
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Frame = +1
Query: 142 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-E 318
T E L PI + + LK+E +RLN I KL + +G++ L+P + E D
Sbjct: 355 TIEQLLPIFLSL--LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412
Query: 319 VLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQAL 498
V LA+ E + + +G G F L + +RD A +L+ +AE P+
Sbjct: 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLEDKVFSIRDAAANNLKRLAEEFGPEWA 472
Query: 499 EEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAE 621
+H +P V + R + S+ P + A + +
Sbjct: 473 MQHIIPQVLEKINNPHYLYRMTILQAISLLAPVMGAEITCQ 513
Score = 34.3 bits (75), Expect = 0.085
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Frame = +1
Query: 172 LIDELKNEDVQ-LRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLLALAEQL 345
+ D+L +D +RL +++ + + L + + ++P + D+ V +A QL
Sbjct: 206 IFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
Query: 346 GSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQ 525
VG L+P L E VR A + SPQ +H +P V+
Sbjct: 266 YELCEAVGPEHSREQLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPQLAIQHILPCVK 325
Query: 526 RLA 534
L+
Sbjct: 326 ELS 328
Score = 28.3 bits (60), Expect = 5.6
Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 2/151 (1%)
Frame = +1
Query: 127 ASDSGTDESLYPIAVLIDELKNEDVQL-RLNSIKKLSTIALALGVERTKSELIPFLTE-T 300
A S D+ + + +L +D+ + R + L A + K+E++ + T
Sbjct: 152 AYPSAPDQLKAELRTIYGQLCQDDMPMVRRAAASNLGKFAATVEQNYLKTEVMSIFDDLT 211
Query: 301 IYDEDEVLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEH 480
D+D V L E + L+ + +LP + + + VR L + E
Sbjct: 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271
Query: 481 HSPQALEEHFVPLVQRLAGGDWFTSRTSACG 573
P+ E VP RL + R +A G
Sbjct: 272 VGPEHSREQLVPAYVRLLRDNEAEVRIAAAG 302
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 142 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEV 321
T++ L PI L + D QLR ++ + +G + L+P+L + + DE EV
Sbjct: 742 TNDFLLPILPAF--LNDRDEQLRAVYFGQIVVVCYFIGSRSVEEYLLPYLEQALSDEMEV 799
Query: 322 LL 327
+L
Sbjct: 800 VL 801
Score = 28.7 bits (61), Expect = 4.2
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 148 ESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLL 327
+S+Y I + + + +R ++ + + G +T L+P L + D DE L
Sbjct: 703 KSIYEIVQELVMGQKQTPNVRRALLQDIGYLCYFFGHRQTNDFLLPILPAFLNDRDEQLR 762
Query: 328 AL-AEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASL 462
A+ Q+ +G LLP LE + E VV K + L
Sbjct: 763 AVYFGQIVVVCYFIGSRSVEEYLLPYLEQALSDEMEVVLVKVLDCL 808
>02_03_0007 - 13875735-13875826,13876217-13877465
Length = 446
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +1
Query: 316 EVLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQA 495
E+LL +L S +GG EF+ +P A+ ++ ++ + AV H SP+A
Sbjct: 219 ELLLINTPRLDSLKITLGGNEFS---VPFSRARIALTNPLLEIESAKEITAVPPHESPKA 275
Query: 496 LEEHFVP 516
L E VP
Sbjct: 276 LLEDEVP 282
>01_06_1591 - 38484790-38485467,38486165-38486292,38487098-38487356
Length = 354
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = -2
Query: 584 TLNSPQADVLEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVS 405
T NS + L ++PP ++ G WCS R A + VS++ S
Sbjct: 5 TPNSGGSSCLPARRTPPPLAAAGEAGSLAAGPGRWCSWRRRQPAERWPKLAVSASGRK-S 63
Query: 404 RGGRRQCANSPP 369
+GGR + P
Sbjct: 64 KGGRDEGGGDEP 75
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 533 ARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAA-NVSRGGRRQCANSP 372
A+RC G +SAC S++A + A A T STAA + S G A P
Sbjct: 104 AKRC--GVTTDASACAKSASSSATAAAAAAGAGTAGSTAASSASTGNAASTAAKP 156
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -2
Query: 578 NSPQADVLEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAA 414
+SPQ +V + P RR S T SSS+C +A +R + S T SST++
Sbjct: 79 SSPQPRPPQVRRPQPPRRHRS-TAPSSSSCQFQAAAPSRPPSALPSPTASSSTSS 132
>04_04_0448 -
25314042-25314183,25314271-25314321,25314437-25315033,
25315151-25315353
Length = 330
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 584 TLNSPQADVLEVNQSPPARRCTSGTKCSSSAC-GLWCSATARSEATALSRTTVSSTA 417
+L +P + +L + + SG+ CSS AC G+ CSA + + T VSST+
Sbjct: 16 SLRTPLSPLLFLRPASCNPSAVSGS-CSSGACRGVRCSAANKPSPSTAPGTEVSSTS 71
>01_01_0051 + 389051-389623
Length = 190
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = -2
Query: 575 SPQADVLEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVSRGG 396
+P A L+ Q TS + SSS+ S ++ S +++ S ++ SS+ +++R
Sbjct: 82 APAASSLKDRQRSSHGTDTSSSSESSSSSSSSSSESSSSSSSSSSESSSSSSDDDLAR-- 139
Query: 395 RRQCANSPPPTKLMK 351
RRQ N PP + K
Sbjct: 140 RRQQRNPSPPPQYKK 154
>07_03_0025 +
12587868-12588429,12591820-12592031,12592212-12592603,
12592608-12592965
Length = 507
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 316 EVLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQA 495
E LL +LGS +G EF+ +P + +++ ++ + AV H SP+A
Sbjct: 115 EQLLINTPRLGSLKITLGENEFS---IPFSRARITLTDSLPEIESAEEVTAVPPHESPEA 171
Query: 496 LEEHFVP 516
L E VP
Sbjct: 172 LLEDEVP 178
>05_06_0070 + 25342965-25343882,25343968-25344618
Length = 522
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 307 DEDEVLLALAEQLGSFINLVGGGEFAHCLLPPLETL---AAVEETVVRDKAVAS 459
DED V + EQLG L + A L PP+ L A+E+TV+ VA+
Sbjct: 353 DEDTVAVVREEQLGKMTLLRAAMKEAMRLHPPVPLLIPREAIEDTVLHGHRVAA 406
>04_04_1476 -
33863067-33863148,33863239-33863310,33863393-33863472,
33863549-33863611,33863837-33863924,33864277-33864339,
33864421-33864494,33864683-33864732,33866126-33866295,
33867041-33867120
Length = 273
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 309 IIDCLSEERDQLRFSPL-HAQSQRDRRQLLYRVQT 208
I+DCLS+ D SP+ H + R+ L+Y V T
Sbjct: 101 ILDCLSKSSDSDHSSPVEHLSCRSSRKTLIYLVLT 135
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 28.3 bits (60), Expect = 5.6
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Frame = +1
Query: 139 GTDESLYPIAV--LIDELKNEDVQL-RLNSIKKLSTIALALGVERTKSELIPFLTETIYD 309
G E ++P V L+D LK++ + R + + LS + ALG + +++P +
Sbjct: 1609 GMGEEIFPDLVPWLLDTLKSDSSNVERSGAAQGLSEVLAALGKDYF-DQILPDIIRNCSH 1667
Query: 310 EDEVLLALAEQLGSFINLVGGGEFAHCL---LPPLETLAAVEETVVRDKAVASLRAVAEH 480
+ + L ++ GG F + L LP + A E VRD A+++ EH
Sbjct: 1668 QKASVRDGHLTLFRYLPRSLGGVFQNYLQIVLPAILDGLADENESVRDAALSAGHVFVEH 1727
Query: 481 HSPQAL 498
++ +L
Sbjct: 1728 YATSSL 1733
>02_05_1287 -
35459419-35459955,35460043-35460966,35461881-35462268,
35463645-35463748,35464740-35464928,35465231-35465362
Length = 757
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 560 VLEVNQSPPARR-CTSGTKCSSSACGLWCSATARSEATALSRTT 432
V+E QSP + C +G++CSSS S T+ S A A T
Sbjct: 60 VVEQLQSPNSTSPCMTGSRCSSSTTARRISVTSASAAAAADDLT 103
>10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376
Length = 418
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 316 EVLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQA 495
E L+ + GS ++G EF+ +P + + + ++V + AV H SP+A
Sbjct: 306 EQLIINTPRFGSLKIILGENEFS---IPFSRARITLTDPLPEIESVEEVTAVPPHESPEA 362
Query: 496 LEEHFVP 516
L E VP
Sbjct: 363 LLEDEVP 369
>02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814
Length = 472
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 488 GLWCSATARSEATALSRTTVSSTAANVSRGGRRQ 387
GLW S+ + S +++ S S++ +N R RR+
Sbjct: 60 GLWFSSLSTSSSSSSSAAATSASGSNAKRRSRRE 93
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 578 NSPQADVLEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRT 435
+S D L N P RR + G CS G+ CS + + + SR+
Sbjct: 280 SSSSDDELLHNSIKPGRRNSGGPSCSICKIGIACSFLIKCKNSTCSRS 327
>12_02_0973 +
24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 453 GFTPCRCRAPQPASTRGTLCATSTAPCWRRLVHFKNI 563
GF CR + LCA+ST +R+ VH+K +
Sbjct: 525 GFQQCRFTVGRVNLDVDYLCASSTYLLYRQFVHYKEL 561
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = -2
Query: 536 PARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQCANSPPPTKL 357
P R CT T C S G W + A A S ++ + V GG + PPP +L
Sbjct: 28 PTRSCT--TSCRSCGRGRWRAPACSPAAGATSGPPRPASTSGVWGGG----GHLPPPERL 81
Query: 356 MK 351
+
Sbjct: 82 AR 83
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 316 EVLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQA 495
E LL +L S +G EF+ +P A+ + ++ ++ + AV H SP+A
Sbjct: 366 EQLLINTPRLDSLKITLGENEFS---IPFSRARIALTDPLLEIESAEEVTAVPPHESPEA 422
Query: 496 LEEHFVP 516
L E VP
Sbjct: 423 LLEDEVP 429
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 27.5 bits (58), Expect = 9.8
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Frame = +1
Query: 220 IKKLSTIALALGVERTKSELIPFLTETIYDE--DEVLLALAEQLGSFINLVGGGEFAHCL 393
+K+ +A++L ++ + +L+ + TI + + L + L + L+G E +
Sbjct: 101 LKRTGYLAVSLFLDE-RHDLVILVVNTIQKDLRSDNYLVVCAALTAACRLIGE-EAIPAV 158
Query: 394 LPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDWFTSRTSACG 573
LP + L A + VR KAV +L + SP ++ +RL D + C
Sbjct: 159 LPQVVELLAHPKEAVRKKAVMALHRFYQ-RSPSSVSHLVSNFRKRLCDNDPGVMGATLCP 217
Query: 574 LFSV 585
L+ +
Sbjct: 218 LYDL 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,010,114
Number of Sequences: 37544
Number of extensions: 308539
Number of successful extensions: 1175
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -