Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17c07
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23514-5|AAC46541.2| 590|Caenorhabditis elegans Phosphatase 2a ... 268 2e-72
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70310-7|CAA94364.1| 607|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z47356-4|CAA87417.1| 431|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF039046-14|AAB94214.1| 388|Caenorhabditis elegans Prion-like-(... 29 3.8
U53149-1|AAD31546.1| 328|Caenorhabditis elegans Prion-like-(q/n... 28 5.0
Z68159-8|CAD01080.1| 310|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 27 8.7
>U23514-5|AAC46541.2| 590|Caenorhabditis elegans Phosphatase 2a
regulatory a subunitprotein 1 protein.
Length = 590
Score = 268 bits (658), Expect = 2e-72
Identities = 129/177 (72%), Positives = 151/177 (85%)
Frame = +1
Query: 121 MAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTET 300
M+ + TD++LYPIAVLIDEL+NEDV LRLNSI+KLSTIALALGVERT++ELI FLT+T
Sbjct: 1 MSVVEEATDDALYPIAVLIDELRNEDVTLRLNSIRKLSTIALALGVERTRNELIQFLTDT 60
Query: 301 IYDEDEVLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEH 480
IYDEDEVLL LAEQLG+F LVGG + HCLL PLE LA VEETVVRDKAV SLR +A+
Sbjct: 61 IYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLPLENLATVEETVVRDKAVESLRKIADK 120
Query: 481 HSPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAELRQHFRSLCQ 651
HS +LEEHFVP+++RLA GDWFTSRTSACGLFSV YPRVS +K+EL+ FR+LC+
Sbjct: 121 HSSASLEEHFVPMLRRLATGDWFTSRTSACGLFSVVYPRVSPAIKSELKSMFRTLCR 177
Score = 31.9 bits (69), Expect = 0.41
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Frame = +1
Query: 142 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYD-EDE 318
T L PI + + L ++ ++RLN I L + +G + + L+P + D +
Sbjct: 363 TVSELLPIYMQL--LNDQTPEVRLNIISSLDKVNEVIGAAQLSTSLLPAIVGLAEDGKWR 420
Query: 319 VLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQAL 498
V LA+ + + + +G F LLP +R+ + ++ + + Q
Sbjct: 421 VRLAIVQFMPLLASQLGQEFFDEKLLPLCLNWLTDHVFSIREASTLIMKELTQKFGGQWA 480
Query: 499 EEHFVPLVQRL 531
+ VP +Q+L
Sbjct: 481 STNIVPKMQKL 491
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = -2
Query: 548 NQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQCANSPP 369
++SPPARR + G+ S S RS+ A S + S + GGRR +NSPP
Sbjct: 206 SRSPPARRRSPGSDRSDRKSRS-ASPKKRSDKRARSESKSRSRS-----GGRRSRSNSPP 259
>Z70310-7|CAA94364.1| 607|Caenorhabditis elegans Hypothetical
protein R11A8.4 protein.
Length = 607
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 512 TKCSSSACGLWCSATARSEATALSR 438
T C SS CG CS+ A SEA LSR
Sbjct: 530 THCESS-CGSSCSSNADSEANQLSR 553
>Z47356-4|CAA87417.1| 431|Caenorhabditis elegans Hypothetical
protein T15H9.4 protein.
Length = 431
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 424 EETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDW 546
E+ ++ +A AS ++ + P+A HF+P+V + W
Sbjct: 33 EDKIISIRATASSASITKESVPEAPPTHFIPVVVTVEPDAW 73
>AF039046-14|AAB94214.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 54
protein.
Length = 388
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -2
Query: 551 VNQSPPARRCTSGTKCS-SSACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQC 384
V Q PA +C S + S SS+C AT + + S S AN S G QC
Sbjct: 328 VQQQQPAAQCQSACQDSCSSSCQAAQPATTACQQSPQSPQNSCSCQANYSPCGNGQC 384
>U53149-1|AAD31546.1| 328|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 16
protein.
Length = 328
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 509 KCSSSACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQCANS 375
+C S+ CG + S + + T + + ++S+ N QC NS
Sbjct: 226 QCQSNTCGQYQSTVSTTTTTPIIQIVLNSSVLNSGSECEPQCENS 270
>Z68159-8|CAD01080.1| 310|Caenorhabditis elegans Hypothetical
protein C33D9.9 protein.
Length = 310
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +1
Query: 118 KMAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIK-------KLSTIALALGVERTKSE 276
++ +S+ S YPIA + + LKNE++Q ++K KL+ L + R K
Sbjct: 235 RVISSEELEASSSYPIASMKNCLKNEEIQKMQKALKEKDEQISKLTEQLQGLLINRDKET 294
Query: 277 LIPFLTETIYDED 315
+ L + YD D
Sbjct: 295 KVEDLQQFEYDGD 307
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 370 GGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEH 480
GG+ A+C P ++ AV V ++ VA R V H
Sbjct: 262 GGDAAYCPCPARSSVMAVNRRVAVNRNVARNRVVVRH 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,463,112
Number of Sequences: 27780
Number of extensions: 257644
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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