Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c03
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    27   2.0  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    27   3.4  
SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr ...    25   7.9  

>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 24/91 (26%), Positives = 37/91 (40%)
 Frame = +3

Query: 300 NIGELFCIAKKXXXXXXXSQASVLLSVPTQAYSYNISQASVSVICPHSGVQL*KQTLVNS 479
           N G +F            S + V+++VP Q  +YN S+A V  +     V+  K   VN 
Sbjct: 139 NAGPIFQKQGHGSLVATASMSGVVVNVPQQQCAYNTSKAGVIQLIKSLAVEWRKFARVNC 198

Query: 480 *AQFVAESLPISKMPRDTNNRRRHRSTPYER 572
               V+     S M     ++     TP+ER
Sbjct: 199 ----VSPGYTTSDMTGGKFHKEWEPYTPFER 225


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -2

Query: 686 SLLFYLYGAEPVLTLPSTHLIAPLQSVFQLSVEIFKRRTFIWRRPVAAAIVGVPWHFAY 510
           S+L  L     V   PS H I  L+ V QL VE+      +W  P+   ++   + FAY
Sbjct: 64  SILQMLLDRSSVPKSPS-H-IKSLKDVVQLQVELDDSGKVLWLCPITRHVMSDTYQFAY 120


>SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 198 FFALQKSSFLPDKFPYHYCLISRTLLINS 112
           F+ +   S +  K+P  YC+I   LLIN+
Sbjct: 21  FYPIFMLSMIARKYPCPYCMIILGLLINT 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,436
Number of Sequences: 5004
Number of extensions: 56752
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)