Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c03
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220...    29   4.7  
02_05_0496 - 29499959-29500653,29501039-29501093                       29   4.7  
07_01_0282 - 2070027-2070041,2074763-2075062,2075154-2075722,207...    28   6.2  

>04_03_0153 +
           11919769-11919880,11920190-11920488,11921909-11922024,
           11922113-11922248,11922959-11923006,11924130-11924228,
           11924317-11924385,11924465-11924599,11924687-11924755,
           11925221-11925276,11925465-11925624,11926534-11926698,
           11927484-11927568,11927646-11927849,11928396-11928487,
           11928571-11928613,11930727-11930884,11931520-11931630,
           11931947-11932012,11933716-11933784,11934181-11934255,
           11934330-11934506,11934598-11934683,11936259-11936313,
           11936901-11936939,11938105-11938230,11938319-11938432,
           11939208-11939265,11939485-11939623,11939698-11939783,
           11939842-11940041
          Length = 1148

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +2

Query: 437 PLRRTAIKADTCQLVSTVCCGEPANKQNAKGHQQSPPPPVYAI*TSYA*RSP 592
           P+RR++ ++ T  L      G+P +  N +     P  PV    T  A  SP
Sbjct: 81  PVRRSSARSSTTALTCPAAAGDPNSLANDRKRDAIPKQPVAPSSTQLARHSP 132


>02_05_0496 - 29499959-29500653,29501039-29501093
          Length = 249

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 428 YLSPLRRTAIKADTCQLVSTVCCGEPANKQNAKGHQQSPPPP 553
           Y+ P+ RT +       V  +   EP ++Q+ +   Q+PPPP
Sbjct: 45  YMRPVART-VTFSAANSVYVIPPAEPPHQQSPEPQPQTPPPP 85


>07_01_0282 -
           2070027-2070041,2074763-2075062,2075154-2075722,
           2075812-2076337
          Length = 469

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 5   PVAALIWRLMAGW*RYCSLGCE 70
           P   L WR M G   YC LGC+
Sbjct: 312 PKIVLCWRYMYGGDDYCDLGCD 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,383,807
Number of Sequences: 37544
Number of extensions: 368846
Number of successful extensions: 1113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)