Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c03
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.52 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    24   1.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   2.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.5  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 659 EPVLTLPSTHLIAPLQSVFQLSVEIFKRRTFI 564
           +P+LT PS++ ++P+ S   L + I  R T I
Sbjct: 432 DPILTPPSSNPVSPVPSPDPLDLAIPVRETLI 463


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 19/72 (26%), Positives = 28/72 (38%)
 Frame = +2

Query: 275 SSYCILYVKHRRTFLYCKKIHFLIYHITGFSTVICPHSGVQL*HITGFSFCYLSPLRRTA 454
           S +  + V  R T   CK     I  +TGF+ ++      +   IT   F    P     
Sbjct: 177 SLFVTIAVDVRDTEDKCKDTFAYIADVTGFALLVYDFRNSRSWRITNNLFYPYPPYGTFN 236

Query: 455 IKADTCQLVSTV 490
           IK DT  L+  +
Sbjct: 237 IKGDTFDLMDGI 248


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 341 LIYHITGFSTVIC 379
           L+YHI G S +IC
Sbjct: 2   LLYHIVGASVLIC 14


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 507 PISKMPRDTNNRRRHRSTPYERPTLEDLHR 596
           PIS    +  +R  +    YE+P+ EDL R
Sbjct: 330 PISPEQEELIHRLVYFQNEYEQPSEEDLKR 359


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 565 YGVDRWRRRLLVSLGILLIG 506
           YGV R  RR++V + ++ +G
Sbjct: 149 YGVKRTPRRMIVYVSLVWLG 168


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 264 TICRVRTVYYMSNIGELFCIA 326
           + C    VY +  IG+ +C+A
Sbjct: 525 SFCGQLDVYKVETIGDAYCVA 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,430
Number of Sequences: 438
Number of extensions: 3977
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)