Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17c02
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 42 8e-05
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 39 6e-04
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 38 0.001
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 36 0.007
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 35 0.012
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 32 0.063
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 30 0.26
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 30 0.26
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 29 0.45
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 29 0.78
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 1.0
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.0
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c... 28 1.0
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 28 1.0
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.4
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 1.8
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 27 2.4
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 3.1
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar... 27 3.1
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 4.2
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 26 4.2
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 4.2
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 26 5.5
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 5.5
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.5
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.3
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 25 7.3
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.3
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 7.3
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 9.6
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 9.6
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 9.6
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.6
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo... 25 9.6
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 9.6
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 41.9 bits (94), Expect = 8e-05
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = +1
Query: 424 KKPKVYGCNLCSAQYKNAQELRAHSLEHQV-----KTRH-KCDECGRYFKKAFSLRLH-Q 582
++ V C++C Q+K A LR H + HQ KT H + C + F ++ +L+ H
Sbjct: 199 REAHVPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHIS 258
Query: 583 KIHT-TMEFDCRFCDMKFTSKGHLFR 657
IH M F C C KF K L R
Sbjct: 259 VIHEGNMAFHCDSCGTKFGYKHMLQR 284
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +1
Query: 412 KSKEKKPKVYGCNL--CSAQYKNAQELRAHSLEHQVKTRHKCDE--CGRYFKKAFSLRLH 579
K+ K++ C C +Y L H H + CD C + F + L++H
Sbjct: 14 KNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIH 73
Query: 580 QKIHTTME-FDCRF--CDMKFTSKGHLFR 657
++ HT ++ F C + CD +F ++ HL R
Sbjct: 74 KRCHTNVKPFSCHYDGCDAQFYTQQHLER 102
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = +1
Query: 433 KVYGCNL--CSAQYKNAQELRAH-SLEHQVKTRHKCDECGRYFKKAFSLRLH 579
K Y C + C + + L+ H S+ H+ CD CG F L+ H
Sbjct: 234 KTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRH 285
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 385 KRRRNDKCRKSKEKKP--KVYGCNLCSAQYKNAQELRAHSLEHQVKTRHKCDECGRYFKK 558
KRR+ + S + P K + C CS ++K ++ LR H + CG+ F +
Sbjct: 403 KRRQPSNRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVCICGKRFSR 462
Query: 559 AFSLRLHQKIH 591
+LR H+++H
Sbjct: 463 RDNLRQHERLH 473
Score = 29.5 bits (63), Expect = 0.45
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 529 CDECGRYFKKAFSLRLH-QKIHTTME-FDCRFCDMKFTSKGHL 651
C EC + FK++ LR H + +HT+ + F C C +F+ + +L
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNL 466
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 37.9 bits (84), Expect = 0.001
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Frame = +1
Query: 283 EPIISEIMVSIEVDEYDEEP-LDFSIKKEDKPATSKRRRNDKCRKSKEKKPKVYGCNLCS 459
E +SE ++SI D S+ KP S K + +K K Y C C+
Sbjct: 18 ESKVSENLMSINSDSGTSNANTPSSVTSNSKPVASSTAAK-KDPNAPPQKVKQYVCETCT 76
Query: 460 AQYKNAQELRAHSLEHQVKTRHKCDE-------CGRYF-KKAFSLRLHQKIH 591
+ + L+ H H + C E CGR F ++ LR QKIH
Sbjct: 77 RAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIH 128
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +1
Query: 439 YGCNLCSAQYKNAQELRAHSLEHQVKTRHKCDE--CGRYFKKAFSLRLHQKIH 591
Y C C + L+ H+ H + CD CG+ F ++R HQ+IH
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 29.1 bits (62), Expect = 0.59
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 496 SLEHQVKTRHKCDECGRYFKKAFSLRLHQKIHT-TMEFDCRF--CDMKFTSKGHLFR 657
S R++C EC + F + SL++H HT F C + C F + ++ R
Sbjct: 459 STSSAANVRYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRR 515
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 34.7 bits (76), Expect = 0.012
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +1
Query: 376 ATSKRRRNDKCRKSKEKK-PKVYGCNLCSAQYKNAQELRAHSLEHQVKTRHKC--DECGR 546
AT+ R +K P+ Y C LC+ + + H H + H C C +
Sbjct: 4 ATTATTTGKPSRSTKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAK 63
Query: 547 YFKKAFSLRLHQKIHT 594
F ++ L H +IHT
Sbjct: 64 RFSRSDELTRHARIHT 79
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 32.3 bits (70), Expect = 0.063
Identities = 25/95 (26%), Positives = 41/95 (43%)
Frame = +1
Query: 154 MSMASNDTDETRNSDGSSDDECLSEVKRKVDLARSKSGDDSDYEPIISEIMVSIEVDEYD 333
M A D D D SS DE E ++K + S + + + I +
Sbjct: 143 MQKAEEDEDRVCE-DASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKK 201
Query: 334 EEPLDFSIKKEDKPATSKRRRNDKCRKSKEKKPKV 438
E KK+DK ++SK+R++ K ++KK K+
Sbjct: 202 EH------KKKDKESSSKKRKSGSSDKEEKKKKKI 230
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +1
Query: 388 RRRNDKCRKSKEKKPKVYGCNLCSAQYKNAQELRAHSLEHQVKTRHKCDECGRYFKKAFS 567
R+ N + + Y C+LC A + +L+ H H+ + C EC + F + +
Sbjct: 456 RKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC-ECLKRFNRLDA 514
Query: 568 LRLHQK 585
L H++
Sbjct: 515 LNRHKQ 520
Score = 29.1 bits (62), Expect = 0.59
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Frame = +1
Query: 295 SEIMVSIEVDEYDEEP---LDFSIK-KEDKPATSKRRRNDKCRKSKEKKPKVYGCNLCSA 462
+++ ++ +V E+D +P + + + K K +T R + S P+ G +C
Sbjct: 388 ADLSITPQVTEHDSKPPVRISYDHRCKTRKQSTRICRIPPETMASLYCGPEADGKYVCLY 447
Query: 463 QYKNAQELRAHSLEHQVKTR-----HKCDECGRYFKKAFSLRLHQKIH 591
N + R +++E ++T ++CD C F + L+ H +IH
Sbjct: 448 NGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIH 495
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 569 KLKAFLKYLPHSSHLCLVLT*CSNECALNSCA 474
K++ + K + S++CL++T C NE L SCA
Sbjct: 198 KIREYHKEMYVPSNICLIVTGCINESRLLSCA 229
>SPBC3B9.06c |apg3||autophagy associated protein Apg3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 275
Score = 29.5 bits (63), Expect = 0.45
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 172 DTDETRNSDGSSDDECLSEVKRKV-DLARSKSGDDSDYEPIISEIMVSIEVDEYDEEPLD 348
+TD+TRN D DD+ +S + D+A ++ E +S+ DE D++ +
Sbjct: 93 ETDDTRNKDDDQDDDAISSIHSDTSDIASAERLKGQSKE--LSDSGPLPLKDEEDDDQMV 150
Query: 349 FSIKKEDK 372
+ KED+
Sbjct: 151 SPVIKEDE 158
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 0.78
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 283 EPIISEIMVSIEVDEYDEEPLDFSIKKEDKPATSKRRRNDKCRKSKEKKPKVYGCNLCSA 462
EP++ +V E L S + D+ KR++ + SK + G N S
Sbjct: 4 EPLLLNFVVD-NAQSRKPEALKSSRRWTDRARDRKRQKRNSNESSKSTVKRNSGTNGAST 62
Query: 463 QYKNAQE 483
YKN+Q+
Sbjct: 63 DYKNSQK 69
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 454 CSAQYKNAQELRAHSLEHQVKTRHKCDECGRYFKKAFSLRLH-QKIH 591
C + + LR H H+ C C R F ++ L H Q++H
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 1.0
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Frame = +1
Query: 169 NDTDETRNSDGSSDDEC--LSEVKRKVDLARSKSGDD--SDYEPIISEIMVSIE----VD 324
+D+D R SD S + S +KRK + S S DD S E ++ I+ S E ++
Sbjct: 236 SDSDTERQSDSGSKNVARQFSRIKRKRKVLSSSSEDDESSSPEDLLKPIIRSTEEMENLN 295
Query: 325 EYDEEPLDFSIKKEDKPATSKRRRNDKCRKSKEK 426
E ++E D E R RN + EK
Sbjct: 296 ELEQEVQDLDPIDEGFEEKVPRFRNPSKKAFYEK 329
>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 124
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 520 RHKCDECGRYFKKAFSLRLHQK 585
+H C EC RYF + +L +H+K
Sbjct: 55 QHYCIECARYFDSSQALLVHKK 76
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/66 (21%), Positives = 24/66 (36%)
Frame = +1
Query: 388 RRRNDKCRKSKEKKPKVYGCNLCSAQYKNAQELRAHSLEHQVKTRHKCDECGRYFKKAFS 567
R N K + + + C++C + + R H H C C + F + +
Sbjct: 583 RAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDA 642
Query: 568 LRLHQK 585
L H K
Sbjct: 643 LNRHYK 648
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 421 EKKPKVYGCNLCSAQYKNAQELRAH 495
E KP Y C +CS +YKN L+ H
Sbjct: 395 ENKP--YRCEVCSKRYKNLNGLKYH 417
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 515 KQGTNVTSAGDISKKPSVYVCIKKYIQQWN 604
K+G+ + ++G ++ K SVY + + +WN
Sbjct: 1535 KEGSKLPTSGPLADKTSVYRILSAFWNEWN 1564
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 361 KEDKPATSKRRRNDKCRKSKEKKPKV 438
K DK + S+RR+N+K RK E+ P +
Sbjct: 1135 KSDKKS-SRRRKNEKRRKLNEQNPNI 1159
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 3.1
Identities = 28/113 (24%), Positives = 51/113 (45%)
Frame = +1
Query: 166 SNDTDETRNSDGSSDDECLSEVKRKVDLARSKSGDDSDYEPIISEIMVSIEVDEYDEEPL 345
S T E D + +E S + + ++ + DD++YE I + S +VDE + E
Sbjct: 27 SVSTKEELGDDALAAEEGQSVLDEQ-EIEEALEEDDTNYEEDIIDDEESAQVDEEELE-- 83
Query: 346 DFSIKKEDKPATSKRRRNDKCRKSKEKKPKVYGCNLCSAQYKNAQELRAHSLE 504
++E++ AT + K K+ KPK G + A + + + +LE
Sbjct: 84 --EEEEEEEDATPEPVVTSK--KNSRSKPKNGGASKRKASRRTVVDEDSENLE 132
>SPAC1002.01 ||SPAC1610.05|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 532 HICALF*LDALMNVLSIPVHFYIGHCTDYIHT 437
HI A L L +L +P+ F+I H D+ T
Sbjct: 84 HIFAFLFLHELSAILPLPIFFFIFHSLDWTPT 115
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 214 ECLSEVKRKVDLARSKSGD-DSDYEPIISEIMVSIEVDEYDEEPLDFSIKKEDKPATSKR 390
EC E+ +++ +G +S Y+P+I+++ I V + DE+ ++ + K + + ++
Sbjct: 316 ECSHEINVLSQQSKNFNGVFESSYQPLINDLDHQISVMQNDEKRINNA--KTELSLSLEK 373
Query: 391 RRNDKCRKSKEKKPKV 438
+ K +K K K K+
Sbjct: 374 KLEAKKQKEKVYKDKL 389
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/75 (22%), Positives = 32/75 (42%)
Frame = +1
Query: 172 DTDETRNSDGSSDDECLSEVKRKVDLARSKSGDDSDYEPIISEIMVSIEVDEYDEEPLDF 351
D D N+D + + + +L+ KS D D+ E++ E E +++ L
Sbjct: 166 DNDLEANADAFDESNLEASLSPNAELSPRKSHIDHDFVIPEDEMLSEEEEQEVEKQILPK 225
Query: 352 SIKKEDKPATSKRRR 396
+ E TS++ R
Sbjct: 226 FVVPESPRKTSRKSR 240
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 310 SIEVDEYDEEPLDFSIKKEDKPATSKRRRNDKCRKSKEKKPK 435
S+E E DE+ +K K K ++ K +K K++K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKK 471
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 166 SNDTDETRNSDGSSDDECLSEVKRKVDLARSKSGDDSDYEPIIS 297
S + E+ ++ S +DE S +K + + ++ D+S+ E S
Sbjct: 156 SEEESESEDNSASEEDELDSAPAKKAQVKKKRTKDESEQEEAAS 199
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Frame = +1
Query: 439 YGCNLCSAQYKNAQELRAH--SLEHQVKTRHKCDECGRYFKKAFSLRL------HQKIHT 594
+ C C+ + NA+ + H S H + K + F+ ++ ++++
Sbjct: 5 FACTTCTVAFNNAESQKIHWKSDWHHYNLKRKVASLPPLSAEVFAGKILSIQKQNEEVQK 64
Query: 595 TMEF--DCRFCDMKFTSKG 645
EF +C C+ KF S+G
Sbjct: 65 KAEFYQNCEVCNKKFYSEG 83
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 337 EPLDFSIKKEDKPATSKRRRNDKCRKS 417
EPL I K DKP+ K +R +K + S
Sbjct: 22 EPLPRRIFKNDKPSKFKSKRKEKDKNS 48
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 7.3
Identities = 27/96 (28%), Positives = 37/96 (38%)
Frame = +1
Query: 250 ARSKSGDDSDYEPIISEIMVSIEVDEYDEEPLDFSIKKEDKPATSKRRRNDKCRKSKEKK 429
A + +GD S P SE +V VDE E K +K + DK K +
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAE-------KPEKEDLAVIESEDKAAKPDGEI 128
Query: 430 PKVYGCNLCSAQYKNAQELRAHSLEHQVKTRHKCDE 537
K + S ++ LE QVKT H +E
Sbjct: 129 KKNVETEVTS---RSTSSQEKDELEKQVKTLHDLNE 161
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 262 SGDDSDYEPIISEIMVSIEVDEYDEEPLDFSIKKED 369
S +D+ +P+ M+ +D+Y+E LDF + E+
Sbjct: 189 SPNDNTIKPVEELGMLEAPLDKYEESLLDFFLHPEE 224
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 427 FSLCSFYICHFSSVLMLPVCL 365
F F++CH LMLPV L
Sbjct: 1774 FFAADFFLCHLLLFLMLPVLL 1794
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 472 NAQELRAHSLEHQVKTRHKCDECGRYFKKAFSLRLHQKIHTTME 603
NA+E + L +V T H E R KKA H++ H M+
Sbjct: 1041 NAEERKVRDLLQKVMTLHTDKEAKRKAKKAAE---HERYHKRMQ 1081
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 9.6
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Frame = +1
Query: 331 DEEPLDFSIKKEDKPATSKRRRNDKCRKSKEKKPKVYGCNLCSAQ---YKNAQELR-AHS 498
D+E F +K +P RR+ C++ + K+ C+ C A K A L+ H
Sbjct: 116 DQEKRQF-LKDLRRPGIDNLRRSQICKRINDHCKKMRRCSKCDAMQGVVKKAGPLKIIHE 174
Query: 499 LEHQVKTRHKCDECGRY-FKKAFSLRLHQKIHTTMEFD 609
V+ +E R+ F +A K+H + D
Sbjct: 175 RFRYVRKSQDDEENFRHSFDEALKTIPELKMHLSKAHD 212
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 355 IKKEDKPATSKRRRNDKCRKSKEKKPKV 438
++K +SKR ++ K ++ KEKK K+
Sbjct: 130 VRKTSGKESSKREKSKKKKEKKEKKDKL 157
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 115 LNLLIF*VMIV**MSMASNDTDETRNSDGSSDDECLS 225
LNL++F V+++ S+ + + +DG SDD+ +S
Sbjct: 644 LNLMLFLVIVLFIASLCAVRLFQDLPNDGDSDDDAIS 680
>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -1
Query: 306 HYLRY-YRLIIAIVTTLRSGEINFSLYFR*TLIIRGAVGISSLIRIIRCHTHLLHYHNLK 130
H +RY Y ++ +L NF+ + + + + S L ++I CH L ++K
Sbjct: 37 HRVRYIYVPRHCLLRSLTYATTNFTKFSKFVYYLAITLHTSLLTKLIYCHADLYALQSIK 96
Query: 129 YQQ 121
Y++
Sbjct: 97 YKR 99
>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 353 ALRRKTNRQHQNGGEMTNVERAKRKNLKCMDVICA 457
A RK + H GG + E +K L DVI A
Sbjct: 95 AYNRKEAKSHGEGGNLVGAEMEGKKVLLLDDVITA 129
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 DDSDYEPIISEIMVSIEVDEYDEEPLDFSIKK-EDKPATSKRRRNDKCRKSKE 423
DDS+ I + S VD ++E P D +I K ED N+ +K E
Sbjct: 45 DDSEAAKITTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDE 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,947
Number of Sequences: 5004
Number of extensions: 47639
Number of successful extensions: 193
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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