Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17c01
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    24   6.6  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    23   8.7  

>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 6   PKAPKSEFIQVLSFLI*RTLVHGRRTVNRLKYLSSSNIKHF 128
           P +PK+ FIQ   FL+    V     +  LK +  S+I  F
Sbjct: 651 PASPKAGFIQSYIFLVKDRSVTNFTVLLELKGVGKSDISSF 691


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 86  YSPSTVHKRPSNKKRQNLDKF 24
           +SPS+   +PSN +  N+ KF
Sbjct: 261 FSPSSNAAKPSNSEECNIPKF 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 919,765
Number of Sequences: 5004
Number of extensions: 12217
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)