Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17b21
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    26   4.5  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   4.5  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   5.9  

>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 94  MKLRNKDCFFLLCRIFFLKKRCLFLLHNHKNLVVQSSM 207
           MKLR+K   +L      ++  C FL HN +N    S++
Sbjct: 1   MKLRDKWKIYLGLTTIKVQCPCFFLFHNDENRTTTSNL 38


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 157 CLFLLHNHKNLVVQSSMYTLMIGLC*ITETARAAMCR 267
           C+  LH HKN ++Q+S +    G   +   +R + CR
Sbjct: 240 CIATLHGHKNTIMQAS-FQKNFGSNYLATVSRDSTCR 275


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 82  CVFFMKLRNKDCF 120
           C FF+ LR KDCF
Sbjct: 497 CGFFLPLRRKDCF 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,744
Number of Sequences: 5004
Number of extensions: 50372
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)