Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17b19
         (427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 186 STLSRLFCAIPCPRRNSVIC 245
           ST++   C   CPRR+  +C
Sbjct: 99  STIAVCVCMRKCPRRHRPVC 118


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 364 NITFSLNVLHNFK 402
           N+T +LNV+H +K
Sbjct: 31  NLTNTLNVIHKWK 43


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 137 QIEEEIKYMEIDDGEEIDTVKTFLRNSMSTAEQRDLY 247
           ++ E+ K  EID+G+E  T  +  R    T +++  Y
Sbjct: 209 KVPEKKKEDEIDEGKESKTKLSQWRKDGGTVKKKVNY 245


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 93  WATSPIFNNTLSDNK 49
           W+T PI + T SDN+
Sbjct: 93  WSTLPIEDLTKSDNE 107


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 93  WATSPIFNNTLSDNK 49
           W+T PI + T SDN+
Sbjct: 131 WSTLPIEDLTKSDNE 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,821
Number of Sequences: 438
Number of extensions: 1410
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)