Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17b18
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    79   5e-16
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    30   0.28 
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    29   0.48 

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 9/164 (5%)
 Frame = +1

Query: 223 PFKTILKAMHHAGQEPFPTIYVDSKDDTKDYDVAAKSQLKKIQK---IWVRENYKAMDXX 393
           PFKT   A+H    +   TI+V  K+ +++++    + LKK +K      ++  KA +  
Sbjct: 38  PFKT---AIHALETDANCTIFV-KKNGSEEFEPITTNALKKAKKGVEQAAKKKAKAAEAE 93

Query: 394 XXXXXXXXX----RSQNLDEAKKILLQEDPSLPKATVVKICESTEHRGQRICIRGWVHRL 561
                         ++ L+ AK I+L+E    P A  + I +ST  R  R+ + GWVHR+
Sbjct: 94  AAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHRM 153

Query: 562 RRQGKSLAFLTLRDGTGYLQCVLHGILCQ--TYNALVLSTESSV 687
           R Q K + F+ LRDGTG+LQCVL G +    +Y+ + L  ES+V
Sbjct: 154 RTQ-KGIIFIILRDGTGFLQCVLSGKVYDRASYDFINLGPESTV 196


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 517 HRGQRICIRGWVHRLRRQGKSLAFLTLRDGT 609
           H G+ I I GWV  +R+  K++ F  + DGT
Sbjct: 18  HNGELISINGWVRSIRKL-KNVCFAMVSDGT 47


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 601 DGTGYLQCVLHGILCQTYNALVLSTES 681
           D  GYL+C+LHG   + YN  +   +S
Sbjct: 295 DHLGYLECILHGDSAKRYNMSIEKVDS 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,988
Number of Sequences: 5004
Number of extensions: 53181
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)