Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17b18
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 39 0.003
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 34 0.12
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 33 0.28
07_03_0406 + 17785046-17785408,17786411-17786479,17786764-177868... 31 0.66
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 31 0.66
10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028 31 1.1
12_01_0193 + 1436165-1437247 29 3.5
06_01_1205 - 10406603-10406651,10407013-10407476 28 8.1
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 8.1
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 523 GQRICIRGWVHRLRRQGKSLAFLTLRDGTGYLQCVLHG 636
G+ + +RG H +R G+ +AFL LR G+ +QCV+ G
Sbjct: 54 GRAVRVRGAAHAVRAVGRRVAFLVLRQGSSTVQCVVGG 91
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 499 ICESTEHRGQRICIRGWVHRLRRQGK-SLAFLTLRDGT 609
+ + G+R+ + GWV R QGK + AFL L DG+
Sbjct: 32 LADGAARAGERVVVGGWVKTGREQGKGTFAFLELNDGS 69
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 523 GQRICIRGWVHRLRRQGKSLAFLTLRDGTGYLQCVL 630
G+ + IRG +R K +AF+ LR+ +QCVL
Sbjct: 98 GRSVLIRGAAQAIRPVSKKMAFVVLRESMSTVQCVL 133
>07_03_0406 +
17785046-17785408,17786411-17786479,17786764-17786868,
17787297-17787346,17787363-17787489,17788084-17788221,
17788863-17788940,17789141-17789218,17789318-17789386,
17789720-17789803,17789895-17789981,17790364-17790459,
17790541-17790615,17790762-17790888,17791027-17791142
Length = 553
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +1
Query: 523 GQRICIRGWVHRLRRQGKSLAFLTLRDGT--GYLQCVL 630
G+++ +RGWV R Q +++ F+ + DG+ +QCVL
Sbjct: 99 GKQLAVRGWVRTCRAQ-RTVTFVEVNDGSCLSNMQCVL 135
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 523 GQRICIRGWVHRLRRQGKSLAFLTLRDGTGYLQ 621
G+R+ + GWV L R L FLTLRD +G +Q
Sbjct: 101 GRRVRLCGWV-ALHRAHAGLTFLTLRDRSGTVQ 132
>10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028
Length = 341
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 502 IFSQQWPLVNLDPLAGESSLPHLSF 428
IF+QQW L+NLD A E + L F
Sbjct: 151 IFNQQWKLINLDLSANEKEVAMLDF 175
>12_01_0193 + 1436165-1437247
Length = 360
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 430 NLDEAKKILLQEDPSLPKATVVKICESTEHR 522
N D A+ IL + S+P +TV K C T+ R
Sbjct: 63 NQDAAEAILRKRKASMPPSTVTKFCTDTDLR 93
>06_01_1205 - 10406603-10406651,10407013-10407476
Length = 170
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 469 PSLPKATVVKICESTEHRGQRICIRG 546
P+L KAT V +C ST+H R + G
Sbjct: 113 PALGKATTVVMCSSTKHALNRRAVAG 138
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +1
Query: 424 SQNLDEAKKILLQ--EDPSLPKAT---VVKICESTEHRGQRICIRGWVHRLRRQGK 576
S +L E ++IL + + P P T VVK+C+ R R+ G V L++ G+
Sbjct: 434 SPDLSEVRRILREHLKIPDAPLKTRRLVVKVCDIVTRRAARLAAAGIVGILKKLGR 489
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,475,773
Number of Sequences: 37544
Number of extensions: 335470
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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