Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17b18
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              26   0.39 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.4  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
 Frame = -3

Query: 432 VLRSLFIVLLFCLSFVH---RLIVLADPNLLDFLQLRFCCYIII-LSVIF*VNINCGKWL 265
           +L SL I  L C   VH   R   ++D  +     +   C     ++ +    +  G+W 
Sbjct: 5   ILLSLLITCLICSPSVHCGTRPSFVSDEMIATAASVVNACQTQTGVATVDIEAVRNGQWP 64

Query: 264 LARMMHCFQYCLEWFLF 214
             R + C+ YCL W  F
Sbjct: 65  ETRQLKCYMYCL-WEQF 80


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 265 EPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVREN 372
           +P+P       DD      A+K  + K  ++WV ++
Sbjct: 105 QPYPDWSFAKYDDCSGIVSASKLAIDKCDRLWVLDS 140


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 265 EPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVREN 372
           +P+P       DD      A+K  + K  ++WV ++
Sbjct: 105 QPYPDWSFAKYDDCSGIVSASKLAIDKCDRLWVLDS 140


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 265 EPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVREN 372
           +P+P       DD      A+K  + K  ++WV ++
Sbjct: 105 QPYPDWSFAKYDDCSGIVSASKLAIDKCDRLWVLDS 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,467
Number of Sequences: 438
Number of extensions: 3477
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)