Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17b17
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   2.1  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    27   2.8  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    26   3.7  
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    26   3.7  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   5.0  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   6.5  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   6.5  

>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 240 SATLFTATAIIHSASPEIFE*FIISNFHFFK*GWRRVLIG 121
           +A++F A  I+ SA    F  F +  FH    GW   L+G
Sbjct: 511 AASVFAANVIMRSAVAGGFPLFAVQMFHNMGVGWAGSLLG 550


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 273 NYFS*SCTFSPSATLFTATAII 208
           +YFS  CT+SP A   TA A+I
Sbjct: 229 DYFSTECTYSPEAFRGTARAMI 250


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 74  DGSFLPLYNITIYSSADKGNERKK 3
           +G FL +YN TI      GNE +K
Sbjct: 604 EGQFLEIYNETIIDLLASGNEEEK 627


>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 263 VDHVPSALPPHYLQLLRSSTVRLQRSLNDLSSLTS 159
           ++H    L  H L+ L  + VRL+ + NDL S++S
Sbjct: 49  IEHQKFVLKKH-LEALPDALVRLRNATNDLESISS 82


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 10  RSLPLSAEEYMVILYSGKKLPSLVEVRNARCIAKPLPTNEYSAPTSFKKVEVRD 171
           +SLP  +    V++   K  PS+ E +  + +  PLP+ E  +    KK ++ D
Sbjct: 464 KSLPTESVGIDVVM-EPKLQPSVKEKKPTKDLQSPLPSVEEDSSNRDKKTDIAD 516


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 297 FFYNCAPSNYFS*SCTFSPSATLFTATAIIHSASP 193
           F YNCA   +F   CT    +    +TA   +  P
Sbjct: 188 FCYNCASDEHFGDDCTLPSRSNYPESTAFCEANCP 222


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 494 IYFFLFELGFC*SMSIYNYFSFLYPNTYFLMSFK 393
           +Y  +FEL       + NY + L  N YF  SFK
Sbjct: 502 LYDRVFELKIATPQVVVNYANLLEENAYFEDSFK 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,596
Number of Sequences: 5004
Number of extensions: 49442
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)